Protein–RNA interactions for Protein: Q9UPQ7

PDZRN3, E3 ubiquitin-protein ligase PDZRN3, humanhuman

Predictions only

Length 1,066 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3Q9UPQ7 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
PDZRN3Q9UPQ7 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.96
PDZRN3Q9UPQ7 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
PDZRN3Q9UPQ7 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
PDZRN3Q9UPQ7 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
PDZRN3Q9UPQ7 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC21.08■□□□□ 0.96
PDZRN3Q9UPQ7 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC21.08■□□□□ 0.96
PDZRN3Q9UPQ7 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
PDZRN3Q9UPQ7 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
PDZRN3Q9UPQ7 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.96
PDZRN3Q9UPQ7 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
PDZRN3Q9UPQ7 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PDZRN3Q9UPQ7 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
PDZRN3Q9UPQ7 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
PDZRN3Q9UPQ7 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC21.07■□□□□ 0.96
PDZRN3Q9UPQ7 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC21.07■□□□□ 0.96
PDZRN3Q9UPQ7 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
PDZRN3Q9UPQ7 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
PDZRN3Q9UPQ7 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC21.07■□□□□ 0.96
PDZRN3Q9UPQ7 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC21.07■□□□□ 0.96
PDZRN3Q9UPQ7 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PDZRN3Q9UPQ7 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC21.07■□□□□ 0.96
PDZRN3Q9UPQ7 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
PDZRN3Q9UPQ7 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC21.07■□□□□ 0.96
PDZRN3Q9UPQ7 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC21.07■□□□□ 0.96
PDZRN3Q9UPQ7 MTRF1LP2-201ENST00000506027 1122 ntBASIC21.07■□□□□ 0.96
PDZRN3Q9UPQ7 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC21.07■□□□□ 0.96
PDZRN3Q9UPQ7 AC027307.2-201ENST00000591252 911 ntBASIC21.07■□□□□ 0.96
PDZRN3Q9UPQ7 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PDZRN3Q9UPQ7 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
PDZRN3Q9UPQ7 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC21.07■□□□□ 0.96
PDZRN3Q9UPQ7 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC21.07■□□□□ 0.96
PDZRN3Q9UPQ7 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC21.07■□□□□ 0.96
PDZRN3Q9UPQ7 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
PDZRN3Q9UPQ7 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PDZRN3Q9UPQ7 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PDZRN3Q9UPQ7 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC21.07■□□□□ 0.96
PDZRN3Q9UPQ7 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PDZRN3Q9UPQ7 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
PDZRN3Q9UPQ7 AC006538.1-201ENST00000567905 1585 ntBASIC21.06■□□□□ 0.96
PDZRN3Q9UPQ7 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
PDZRN3Q9UPQ7 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
PDZRN3Q9UPQ7 AC046158.3-201ENST00000624947 2558 ntBASIC21.06■□□□□ 0.96
PDZRN3Q9UPQ7 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
PDZRN3Q9UPQ7 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PDZRN3Q9UPQ7 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC21.06■□□□□ 0.96
PDZRN3Q9UPQ7 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
PDZRN3Q9UPQ7 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
PDZRN3Q9UPQ7 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
PDZRN3Q9UPQ7 SERBP1P5-201ENST00000510079 1181 ntBASIC21.06■□□□□ 0.96
PDZRN3Q9UPQ7 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC21.06■□□□□ 0.96
PDZRN3Q9UPQ7 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC21.06■□□□□ 0.96
PDZRN3Q9UPQ7 AL596325.1-201ENST00000563991 1082 ntBASIC21.06■□□□□ 0.96
PDZRN3Q9UPQ7 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC21.06■□□□□ 0.96
PDZRN3Q9UPQ7 MIR6752-201ENST00000618442 71 ntBASIC21.06■□□□□ 0.96
PDZRN3Q9UPQ7 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC21.06■□□□□ 0.96
PDZRN3Q9UPQ7 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PDZRN3Q9UPQ7 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
PDZRN3Q9UPQ7 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
PDZRN3Q9UPQ7 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC21.06■□□□□ 0.96
PDZRN3Q9UPQ7 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC21.06■□□□□ 0.96
PDZRN3Q9UPQ7 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
PDZRN3Q9UPQ7 GRAMD4P3-201ENST00000621665 1669 ntBASIC21.05■□□□□ 0.96
PDZRN3Q9UPQ7 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC21.05■□□□□ 0.96
PDZRN3Q9UPQ7 AC008894.3-201ENST00000624324 3103 ntBASIC21.05■□□□□ 0.96
PDZRN3Q9UPQ7 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
PDZRN3Q9UPQ7 AC006277.1-201ENST00000624348 1610 ntBASIC21.05■□□□□ 0.96
PDZRN3Q9UPQ7 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PDZRN3Q9UPQ7 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC21.05■□□□□ 0.96
PDZRN3Q9UPQ7 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PDZRN3Q9UPQ7 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC21.05■□□□□ 0.96
PDZRN3Q9UPQ7 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC21.05■□□□□ 0.96
PDZRN3Q9UPQ7 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC21.05■□□□□ 0.96
PDZRN3Q9UPQ7 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC21.05■□□□□ 0.96
PDZRN3Q9UPQ7 AL008721.1-201ENST00000609964 604 ntBASIC21.05■□□□□ 0.96
PDZRN3Q9UPQ7 AC073592.8-201ENST00000624126 511 ntBASIC21.05■□□□□ 0.96
PDZRN3Q9UPQ7 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC21.05■□□□□ 0.96
PDZRN3Q9UPQ7 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
PDZRN3Q9UPQ7 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
PDZRN3Q9UPQ7 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC21.05■□□□□ 0.96
PDZRN3Q9UPQ7 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC21.05■□□□□ 0.96
PDZRN3Q9UPQ7 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
PDZRN3Q9UPQ7 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PDZRN3Q9UPQ7 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
PDZRN3Q9UPQ7 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PDZRN3Q9UPQ7 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC21.05■□□□□ 0.96
PDZRN3Q9UPQ7 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
PDZRN3Q9UPQ7 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
PDZRN3Q9UPQ7 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PDZRN3Q9UPQ7 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
PDZRN3Q9UPQ7 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PDZRN3Q9UPQ7 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
PDZRN3Q9UPQ7 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC21.04■□□□□ 0.96
PDZRN3Q9UPQ7 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
PDZRN3Q9UPQ7 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PDZRN3Q9UPQ7 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PDZRN3Q9UPQ7 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC21.04■□□□□ 0.96
PDZRN3Q9UPQ7 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC21.04■□□□□ 0.96
PDZRN3Q9UPQ7 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PDZRN3Q9UPQ7 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms