Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.03■□□□□ 0.32
LIMD1Q9UGP4 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIMD1Q9UGP4 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC17.03■□□□□ 0.32
LIMD1Q9UGP4 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIMD1Q9UGP4 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIMD1Q9UGP4 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LIMD1Q9UGP4 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
LIMD1Q9UGP4 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LIMD1Q9UGP4 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC17.03■□□□□ 0.32
LIMD1Q9UGP4 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC17.03■□□□□ 0.32
LIMD1Q9UGP4 RBM39-205ENST00000397370 612 ntTSL 2 BASIC17.03■□□□□ 0.32
LIMD1Q9UGP4 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
LIMD1Q9UGP4 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC17.03■□□□□ 0.32
LIMD1Q9UGP4 AC090142.2-201ENST00000483263 416 ntBASIC17.03■□□□□ 0.32
LIMD1Q9UGP4 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
LIMD1Q9UGP4 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC17.03■□□□□ 0.32
LIMD1Q9UGP4 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC17.03■□□□□ 0.32
LIMD1Q9UGP4 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC17.03■□□□□ 0.32
LIMD1Q9UGP4 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIMD1Q9UGP4 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LIMD1Q9UGP4 AC124067.4-201ENST00000519691 2379 ntBASIC17.03■□□□□ 0.32
LIMD1Q9UGP4 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIMD1Q9UGP4 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIMD1Q9UGP4 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
LIMD1Q9UGP4 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIMD1Q9UGP4 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LIMD1Q9UGP4 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
LIMD1Q9UGP4 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIMD1Q9UGP4 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
LIMD1Q9UGP4 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
LIMD1Q9UGP4 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.03■□□□□ 0.32
LIMD1Q9UGP4 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LIMD1Q9UGP4 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC17.02■□□□□ 0.32
LIMD1Q9UGP4 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC17.02■□□□□ 0.32
LIMD1Q9UGP4 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC17.02■□□□□ 0.32
LIMD1Q9UGP4 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC17.02■□□□□ 0.32
LIMD1Q9UGP4 AC022211.2-201ENST00000585075 2527 ntBASIC17.02■□□□□ 0.32
LIMD1Q9UGP4 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
LIMD1Q9UGP4 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LIMD1Q9UGP4 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.32
LIMD1Q9UGP4 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC17.02■□□□□ 0.32
LIMD1Q9UGP4 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
LIMD1Q9UGP4 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LIMD1Q9UGP4 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
LIMD1Q9UGP4 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
LIMD1Q9UGP4 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
LIMD1Q9UGP4 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC17.02■□□□□ 0.32
LIMD1Q9UGP4 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC17.02■□□□□ 0.32
LIMD1Q9UGP4 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC17.02■□□□□ 0.32
LIMD1Q9UGP4 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC17.02■□□□□ 0.32
LIMD1Q9UGP4 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC17.02■□□□□ 0.32
LIMD1Q9UGP4 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC17.02■□□□□ 0.32
LIMD1Q9UGP4 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC17.02■□□□□ 0.32
LIMD1Q9UGP4 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
LIMD1Q9UGP4 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
LIMD1Q9UGP4 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC17.02■□□□□ 0.32
LIMD1Q9UGP4 AL033527.4-201ENST00000641026 673 ntBASIC17.02■□□□□ 0.32
LIMD1Q9UGP4 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
LIMD1Q9UGP4 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
LIMD1Q9UGP4 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC17.02■□□□□ 0.31
LIMD1Q9UGP4 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC17.02■□□□□ 0.31
LIMD1Q9UGP4 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.31
LIMD1Q9UGP4 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
LIMD1Q9UGP4 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC17.02■□□□□ 0.31
LIMD1Q9UGP4 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
LIMD1Q9UGP4 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
LIMD1Q9UGP4 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
LIMD1Q9UGP4 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
LIMD1Q9UGP4 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.02■□□□□ 0.31
LIMD1Q9UGP4 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
LIMD1Q9UGP4 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
LIMD1Q9UGP4 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
LIMD1Q9UGP4 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 REXO1L6P-201ENST00000603433 1515 ntBASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 AP001094.4-201ENST00000579008 2176 ntBASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 RPL28-204ENST00000431533 590 ntTSL 2 BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 WDR53-204ENST00000433160 887 ntTSL 5 BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 AC114501.2-201ENST00000439631 535 ntBASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms