Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SIX2Q9NPC8 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SIX2Q9NPC8 AKAP8P1-201ENST00000434743 1349 ntBASIC17.5■□□□□ 0.39
SIX2Q9NPC8 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SIX2Q9NPC8 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SIX2Q9NPC8 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SIX2Q9NPC8 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
SIX2Q9NPC8 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SIX2Q9NPC8 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC17.5■□□□□ 0.39
SIX2Q9NPC8 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC17.5■□□□□ 0.39
SIX2Q9NPC8 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SIX2Q9NPC8 FAM58CP-201ENST00000435741 640 ntBASIC17.5■□□□□ 0.39
SIX2Q9NPC8 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC17.5■□□□□ 0.39
SIX2Q9NPC8 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC17.5■□□□□ 0.39
SIX2Q9NPC8 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC17.5■□□□□ 0.39
SIX2Q9NPC8 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
SIX2Q9NPC8 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC17.5■□□□□ 0.39
SIX2Q9NPC8 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC17.5■□□□□ 0.39
SIX2Q9NPC8 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.5■□□□□ 0.39
SIX2Q9NPC8 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
SIX2Q9NPC8 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
SIX2Q9NPC8 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
SIX2Q9NPC8 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC17.5■□□□□ 0.39
SIX2Q9NPC8 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SIX2Q9NPC8 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SIX2Q9NPC8 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
SIX2Q9NPC8 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC17.5■□□□□ 0.39
SIX2Q9NPC8 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SIX2Q9NPC8 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SIX2Q9NPC8 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SIX2Q9NPC8 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SIX2Q9NPC8 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
SIX2Q9NPC8 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SIX2Q9NPC8 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC17.49■□□□□ 0.39
SIX2Q9NPC8 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SIX2Q9NPC8 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SIX2Q9NPC8 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SIX2Q9NPC8 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
SIX2Q9NPC8 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SIX2Q9NPC8 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC17.49■□□□□ 0.39
SIX2Q9NPC8 MIR940-201ENST00000401276 94 ntBASIC17.49■□□□□ 0.39
SIX2Q9NPC8 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC17.49■□□□□ 0.39
SIX2Q9NPC8 TFAMP1-201ENST00000412727 736 ntBASIC17.49■□□□□ 0.39
SIX2Q9NPC8 AC142381.1-201ENST00000426099 345 ntBASIC17.49■□□□□ 0.39
SIX2Q9NPC8 AL671277.1-201ENST00000429656 993 ntBASIC17.49■□□□□ 0.39
SIX2Q9NPC8 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC17.49■□□□□ 0.39
SIX2Q9NPC8 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC17.49■□□□□ 0.39
SIX2Q9NPC8 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC17.49■□□□□ 0.39
SIX2Q9NPC8 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC17.49■□□□□ 0.39
SIX2Q9NPC8 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC17.49■□□□□ 0.39
SIX2Q9NPC8 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC17.49■□□□□ 0.39
SIX2Q9NPC8 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SIX2Q9NPC8 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
SIX2Q9NPC8 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SIX2Q9NPC8 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SIX2Q9NPC8 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SIX2Q9NPC8 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SIX2Q9NPC8 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SIX2Q9NPC8 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC17.49■□□□□ 0.39
SIX2Q9NPC8 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
SIX2Q9NPC8 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC17.49■□□□□ 0.39
SIX2Q9NPC8 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC17.49■□□□□ 0.39
SIX2Q9NPC8 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC17.49■□□□□ 0.39
SIX2Q9NPC8 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SIX2Q9NPC8 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SIX2Q9NPC8 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
SIX2Q9NPC8 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SIX2Q9NPC8 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC17.48■□□□□ 0.39
SIX2Q9NPC8 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC17.48■□□□□ 0.39
SIX2Q9NPC8 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SIX2Q9NPC8 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SIX2Q9NPC8 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SIX2Q9NPC8 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SIX2Q9NPC8 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SIX2Q9NPC8 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SIX2Q9NPC8 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC17.48■□□□□ 0.39
SIX2Q9NPC8 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SIX2Q9NPC8 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SIX2Q9NPC8 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SIX2Q9NPC8 MCCD1P2-201ENST00000423228 335 ntBASIC17.48■□□□□ 0.39
SIX2Q9NPC8 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC17.48■□□□□ 0.39
SIX2Q9NPC8 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
SIX2Q9NPC8 POLD2P1-201ENST00000511220 997 ntBASIC17.48■□□□□ 0.39
SIX2Q9NPC8 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC17.48■□□□□ 0.39
SIX2Q9NPC8 AC243562.1-201ENST00000560672 389 ntBASIC17.48■□□□□ 0.39
SIX2Q9NPC8 AC061975.2-201ENST00000581722 295 ntBASIC17.48■□□□□ 0.39
SIX2Q9NPC8 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC17.48■□□□□ 0.39
SIX2Q9NPC8 NKG7-205ENST00000600427 520 ntTSL 3 BASIC17.48■□□□□ 0.39
SIX2Q9NPC8 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
SIX2Q9NPC8 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SIX2Q9NPC8 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.48■□□□□ 0.39
SIX2Q9NPC8 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SIX2Q9NPC8 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SIX2Q9NPC8 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC17.48■□□□□ 0.39
SIX2Q9NPC8 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
SIX2Q9NPC8 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC17.48■□□□□ 0.39
SIX2Q9NPC8 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
SIX2Q9NPC8 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SIX2Q9NPC8 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC17.47■□□□□ 0.39
SIX2Q9NPC8 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms