Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VPS13AQ96RL7 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VPS13AQ96RL7 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VPS13AQ96RL7 AC114501.1-201ENST00000445949 172 ntBASIC15.89■□□□□ 0.13
VPS13AQ96RL7 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC15.89■□□□□ 0.13
VPS13AQ96RL7 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC15.89■□□□□ 0.13
VPS13AQ96RL7 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC15.89■□□□□ 0.13
VPS13AQ96RL7 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VPS13AQ96RL7 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VPS13AQ96RL7 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC15.89■□□□□ 0.13
VPS13AQ96RL7 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 AC092171.3-201ENST00000610122 2651 ntBASIC15.88■□□□□ 0.13
VPS13AQ96RL7 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 AC005077.2-201ENST00000449786 690 ntBASIC15.88■□□□□ 0.13
VPS13AQ96RL7 AC134698.3-201ENST00000523880 214 ntBASIC15.88■□□□□ 0.13
VPS13AQ96RL7 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 EEF1DP1-201ENST00000585891 896 ntBASIC15.88■□□□□ 0.13
VPS13AQ96RL7 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 CES3-203ENST00000543856 3178 ntTSL 2 BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 METTL26-214ENST00000614890 801 ntTSL 3 BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS13AQ96RL7 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
VPS13AQ96RL7 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
VPS13AQ96RL7 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC15.87■□□□□ 0.13
VPS13AQ96RL7 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC15.87■□□□□ 0.13
VPS13AQ96RL7 AC018635.2-201ENST00000608625 364 ntBASIC15.87■□□□□ 0.13
VPS13AQ96RL7 AF254983.2-201ENST00000612331 135 ntBASIC15.87■□□□□ 0.13
VPS13AQ96RL7 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC15.87■□□□□ 0.13
VPS13AQ96RL7 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
VPS13AQ96RL7 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
VPS13AQ96RL7 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
VPS13AQ96RL7 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
VPS13AQ96RL7 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
VPS13AQ96RL7 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
VPS13AQ96RL7 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC15.87■□□□□ 0.13
VPS13AQ96RL7 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
VPS13AQ96RL7 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC15.87■□□□□ 0.13
VPS13AQ96RL7 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
VPS13AQ96RL7 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
VPS13AQ96RL7 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
VPS13AQ96RL7 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC15.87■□□□□ 0.13
VPS13AQ96RL7 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
VPS13AQ96RL7 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC15.87■□□□□ 0.13
VPS13AQ96RL7 AC024267.1-201ENST00000582320 895 ntBASIC15.87■□□□□ 0.13
VPS13AQ96RL7 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
VPS13AQ96RL7 AC134043.2-201ENST00000624206 2238 ntBASIC15.87■□□□□ 0.13
VPS13AQ96RL7 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
VPS13AQ96RL7 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
VPS13AQ96RL7 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
VPS13AQ96RL7 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
VPS13AQ96RL7 AL603756.1-201ENST00000606511 2163 ntBASIC15.87■□□□□ 0.13
VPS13AQ96RL7 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
VPS13AQ96RL7 SNX21-203ENST00000372541 771 ntTSL 2 BASIC15.87■□□□□ 0.13
VPS13AQ96RL7 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
VPS13AQ96RL7 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
VPS13AQ96RL7 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
VPS13AQ96RL7 PTPA-217ENST00000434095 870 ntTSL 2 BASIC15.87■□□□□ 0.13
VPS13AQ96RL7 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
VPS13AQ96RL7 AC138951.2-201ENST00000623455 1161 ntBASIC15.87■□□□□ 0.13
VPS13AQ96RL7 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC15.87■□□□□ 0.13
VPS13AQ96RL7 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
VPS13AQ96RL7 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
VPS13AQ96RL7 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms