Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB4Q8WW32 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
HMGB4Q8WW32 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB4Q8WW32 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB4Q8WW32 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.36■□□□□ 0.21
HMGB4Q8WW32 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB4Q8WW32 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16.36■□□□□ 0.21
HMGB4Q8WW32 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB4Q8WW32 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC16.35■□□□□ 0.21
HMGB4Q8WW32 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB4Q8WW32 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC16.35■□□□□ 0.21
HMGB4Q8WW32 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB4Q8WW32 AL023806.1-201ENST00000603994 1649 ntBASIC16.35■□□□□ 0.21
HMGB4Q8WW32 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC16.35■□□□□ 0.21
HMGB4Q8WW32 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
HMGB4Q8WW32 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC16.35■□□□□ 0.21
HMGB4Q8WW32 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB4Q8WW32 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
HMGB4Q8WW32 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
HMGB4Q8WW32 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB4Q8WW32 SDHAP3-202ENST00000515467 728 ntBASIC16.35■□□□□ 0.21
HMGB4Q8WW32 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC16.35■□□□□ 0.21
HMGB4Q8WW32 AC055876.2-201ENST00000531834 546 ntBASIC16.35■□□□□ 0.21
HMGB4Q8WW32 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB4Q8WW32 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
HMGB4Q8WW32 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
HMGB4Q8WW32 SRD5A3P1-201ENST00000603021 949 ntBASIC16.35■□□□□ 0.21
HMGB4Q8WW32 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC16.35■□□□□ 0.21
HMGB4Q8WW32 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
HMGB4Q8WW32 AC004461.2-201ENST00000629517 803 ntBASIC16.35■□□□□ 0.21
HMGB4Q8WW32 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB4Q8WW32 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB4Q8WW32 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB4Q8WW32 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
HMGB4Q8WW32 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB4Q8WW32 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB4Q8WW32 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB4Q8WW32 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB4Q8WW32 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB4Q8WW32 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB4Q8WW32 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC16.35■□□□□ 0.21
HMGB4Q8WW32 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC16.35■□□□□ 0.21
HMGB4Q8WW32 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
HMGB4Q8WW32 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB4Q8WW32 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB4Q8WW32 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB4Q8WW32 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB4Q8WW32 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
HMGB4Q8WW32 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC16.34■□□□□ 0.21
HMGB4Q8WW32 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC16.34■□□□□ 0.21
HMGB4Q8WW32 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.34■□□□□ 0.21
HMGB4Q8WW32 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB4Q8WW32 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB4Q8WW32 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
HMGB4Q8WW32 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB4Q8WW32 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC16.34■□□□□ 0.21
HMGB4Q8WW32 MIR6069-201ENST00000620069 79 ntBASIC16.34■□□□□ 0.21
HMGB4Q8WW32 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB4Q8WW32 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC16.34■□□□□ 0.21
HMGB4Q8WW32 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
HMGB4Q8WW32 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB4Q8WW32 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.34■□□□□ 0.21
HMGB4Q8WW32 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB4Q8WW32 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB4Q8WW32 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
HMGB4Q8WW32 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.21
HMGB4Q8WW32 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
HMGB4Q8WW32 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
HMGB4Q8WW32 AC060834.1-201ENST00000443027 2032 ntBASIC16.33■□□□□ 0.21
HMGB4Q8WW32 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC16.33■□□□□ 0.21
HMGB4Q8WW32 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.33■□□□□ 0.21
HMGB4Q8WW32 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16.33■□□□□ 0.2
HMGB4Q8WW32 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HMGB4Q8WW32 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGB4Q8WW32 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
HMGB4Q8WW32 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HMGB4Q8WW32 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
HMGB4Q8WW32 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC16.33■□□□□ 0.2
HMGB4Q8WW32 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGB4Q8WW32 HLA-V-201ENST00000429037 534 ntBASIC16.33■□□□□ 0.2
HMGB4Q8WW32 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC16.33■□□□□ 0.2
HMGB4Q8WW32 AL139010.1-201ENST00000454878 894 ntBASIC16.33■□□□□ 0.2
HMGB4Q8WW32 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HMGB4Q8WW32 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC16.33■□□□□ 0.2
HMGB4Q8WW32 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC16.33■□□□□ 0.2
HMGB4Q8WW32 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC16.33■□□□□ 0.2
HMGB4Q8WW32 AC017083.2-201ENST00000608069 979 ntBASIC16.33■□□□□ 0.2
HMGB4Q8WW32 SERF2-217ENST00000630046 862 ntTSL 5 BASIC16.33■□□□□ 0.2
HMGB4Q8WW32 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGB4Q8WW32 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGB4Q8WW32 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
HMGB4Q8WW32 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.33■□□□□ 0.2
HMGB4Q8WW32 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
HMGB4Q8WW32 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGB4Q8WW32 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGB4Q8WW32 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
HMGB4Q8WW32 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.33■□□□□ 0.2
HMGB4Q8WW32 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
HMGB4Q8WW32 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGB4Q8WW32 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 63.9 ms