Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.78■□□□□ 0.12
CLHC1Q8NHS4 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLHC1Q8NHS4 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
CLHC1Q8NHS4 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CLHC1Q8NHS4 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC15.77■□□□□ 0.12
CLHC1Q8NHS4 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CLHC1Q8NHS4 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
CLHC1Q8NHS4 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
CLHC1Q8NHS4 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CLHC1Q8NHS4 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
CLHC1Q8NHS4 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
CLHC1Q8NHS4 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
CLHC1Q8NHS4 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CLHC1Q8NHS4 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CLHC1Q8NHS4 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CLHC1Q8NHS4 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
CLHC1Q8NHS4 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC15.77■□□□□ 0.12
CLHC1Q8NHS4 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC15.77■□□□□ 0.12
CLHC1Q8NHS4 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CLHC1Q8NHS4 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CLHC1Q8NHS4 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC15.77■□□□□ 0.12
CLHC1Q8NHS4 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
CLHC1Q8NHS4 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC15.77■□□□□ 0.12
CLHC1Q8NHS4 RPS15-207ENST00000591032 550 ntTSL 3 BASIC15.77■□□□□ 0.12
CLHC1Q8NHS4 RPS15-212ENST00000593052 629 ntTSL 2 BASIC15.77■□□□□ 0.12
CLHC1Q8NHS4 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC15.77■□□□□ 0.12
CLHC1Q8NHS4 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CLHC1Q8NHS4 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
CLHC1Q8NHS4 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC15.77■□□□□ 0.11
CLHC1Q8NHS4 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CLHC1Q8NHS4 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC15.77■□□□□ 0.11
CLHC1Q8NHS4 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
CLHC1Q8NHS4 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
CLHC1Q8NHS4 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC15.77■□□□□ 0.11
CLHC1Q8NHS4 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
CLHC1Q8NHS4 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
CLHC1Q8NHS4 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
CLHC1Q8NHS4 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CLHC1Q8NHS4 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CLHC1Q8NHS4 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
CLHC1Q8NHS4 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
CLHC1Q8NHS4 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CLHC1Q8NHS4 AP002414.2-201ENST00000591780 3365 ntBASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 DPM2-202ENST00000373110 738 ntTSL 2 BASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 RN7SL510P-201ENST00000581311 263 ntBASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 MIR7706-201ENST00000613747 67 ntBASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 AL031008.1-201ENST00000619963 541 ntBASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 PGM5P2-202ENST00000637225 1043 ntBASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 VPS51-217ENST00000639871 243 ntTSL 5 BASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 ANKRD26P3-201ENST00000454044 2748 ntBASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
CLHC1Q8NHS4 NORAD-201ENST00000565493 5339 ntBASIC15.75■□□□□ 0.11
CLHC1Q8NHS4 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
CLHC1Q8NHS4 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CLHC1Q8NHS4 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
CLHC1Q8NHS4 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC15.75■□□□□ 0.11
CLHC1Q8NHS4 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC15.75■□□□□ 0.11
CLHC1Q8NHS4 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
CLHC1Q8NHS4 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
CLHC1Q8NHS4 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CLHC1Q8NHS4 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC15.75■□□□□ 0.11
CLHC1Q8NHS4 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CLHC1Q8NHS4 AC005622.1-201ENST00000636801 1703 ntBASIC15.75■□□□□ 0.11
CLHC1Q8NHS4 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC15.75■□□□□ 0.11
CLHC1Q8NHS4 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CLHC1Q8NHS4 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CLHC1Q8NHS4 RPS2P28-201ENST00000314255 741 ntBASIC15.75■□□□□ 0.11
CLHC1Q8NHS4 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms