Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 AC093520.2-201ENST00000561830 333 ntBASIC19.76■□□□□ 0.75
VPS53Q5VIR6 LINC01225-203ENST00000563550 1244 ntBASIC19.76■□□□□ 0.75
VPS53Q5VIR6 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 AL513210.1-201ENST00000629608 234 ntBASIC19.76■□□□□ 0.75
VPS53Q5VIR6 PCDHA1-201ENST00000378133 2726 ntBASIC19.76■□□□□ 0.75
VPS53Q5VIR6 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS53Q5VIR6 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS53Q5VIR6 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC19.75■□□□□ 0.75
VPS53Q5VIR6 AC073439.1-201ENST00000624121 1774 ntBASIC19.75■□□□□ 0.75
VPS53Q5VIR6 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS53Q5VIR6 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS53Q5VIR6 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VPS53Q5VIR6 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS53Q5VIR6 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
VPS53Q5VIR6 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS53Q5VIR6 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS53Q5VIR6 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS53Q5VIR6 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
VPS53Q5VIR6 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VPS53Q5VIR6 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS53Q5VIR6 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC19.75■□□□□ 0.75
VPS53Q5VIR6 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS53Q5VIR6 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC19.75■□□□□ 0.75
VPS53Q5VIR6 AC004461.1-201ENST00000412461 403 ntBASIC19.75■□□□□ 0.75
VPS53Q5VIR6 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC19.75■□□□□ 0.75
VPS53Q5VIR6 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
VPS53Q5VIR6 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
VPS53Q5VIR6 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC19.75■□□□□ 0.75
VPS53Q5VIR6 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC19.75■□□□□ 0.75
VPS53Q5VIR6 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC19.75■□□□□ 0.75
VPS53Q5VIR6 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS53Q5VIR6 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS53Q5VIR6 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS53Q5VIR6 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC19.75■□□□□ 0.75
VPS53Q5VIR6 FOXO1B-201ENST00000504678 1527 ntBASIC19.75■□□□□ 0.75
VPS53Q5VIR6 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS53Q5VIR6 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS53Q5VIR6 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS53Q5VIR6 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
VPS53Q5VIR6 AKAP8P1-201ENST00000434743 1349 ntBASIC19.75■□□□□ 0.75
VPS53Q5VIR6 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC19.75■□□□□ 0.75
VPS53Q5VIR6 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC19.74■□□□□ 0.75
VPS53Q5VIR6 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS53Q5VIR6 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS53Q5VIR6 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC19.74■□□□□ 0.75
VPS53Q5VIR6 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
VPS53Q5VIR6 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC19.74■□□□□ 0.75
VPS53Q5VIR6 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS53Q5VIR6 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
VPS53Q5VIR6 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS53Q5VIR6 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS53Q5VIR6 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC19.74■□□□□ 0.75
VPS53Q5VIR6 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS53Q5VIR6 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS53Q5VIR6 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC19.74■□□□□ 0.75
VPS53Q5VIR6 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS53Q5VIR6 AC004967.1-201ENST00000453589 447 ntBASIC19.74■□□□□ 0.75
VPS53Q5VIR6 KRT18P34-201ENST00000488218 1270 ntBASIC19.74■□□□□ 0.75
VPS53Q5VIR6 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC19.74■□□□□ 0.75
VPS53Q5VIR6 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC19.74■□□□□ 0.75
VPS53Q5VIR6 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC19.74■□□□□ 0.75
VPS53Q5VIR6 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC19.74■□□□□ 0.75
VPS53Q5VIR6 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC19.74■□□□□ 0.75
VPS53Q5VIR6 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC19.74■□□□□ 0.75
VPS53Q5VIR6 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC19.74■□□□□ 0.75
VPS53Q5VIR6 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
VPS53Q5VIR6 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC19.74■□□□□ 0.75
VPS53Q5VIR6 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
VPS53Q5VIR6 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS53Q5VIR6 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
VPS53Q5VIR6 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC19.74■□□□□ 0.75
VPS53Q5VIR6 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC19.74■□□□□ 0.75
VPS53Q5VIR6 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC19.74■□□□□ 0.75
VPS53Q5VIR6 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS53Q5VIR6 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC19.74■□□□□ 0.75
VPS53Q5VIR6 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms