Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SF3A1Q15459 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SF3A1Q15459 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SF3A1Q15459 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SF3A1Q15459 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC18.98■□□□□ 0.63
SF3A1Q15459 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SF3A1Q15459 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SF3A1Q15459 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SF3A1Q15459 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
SF3A1Q15459 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SF3A1Q15459 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SF3A1Q15459 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC18.97■□□□□ 0.63
SF3A1Q15459 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SF3A1Q15459 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SF3A1Q15459 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SF3A1Q15459 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SF3A1Q15459 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SF3A1Q15459 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SF3A1Q15459 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SF3A1Q15459 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC18.97■□□□□ 0.63
SF3A1Q15459 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SF3A1Q15459 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SF3A1Q15459 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SF3A1Q15459 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SF3A1Q15459 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SF3A1Q15459 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SF3A1Q15459 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
SF3A1Q15459 SLC4A1APP2-201ENST00000424054 1259 ntBASIC18.97■□□□□ 0.63
SF3A1Q15459 CXCL1P1-201ENST00000502804 216 ntBASIC18.97■□□□□ 0.63
SF3A1Q15459 POLD4-207ENST00000531239 584 ntTSL 2 BASIC18.97■□□□□ 0.63
SF3A1Q15459 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC18.97■□□□□ 0.63
SF3A1Q15459 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
SF3A1Q15459 MIR4751-201ENST00000578027 74 ntBASIC18.97■□□□□ 0.63
SF3A1Q15459 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC18.97■□□□□ 0.63
SF3A1Q15459 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SF3A1Q15459 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC18.97■□□□□ 0.63
SF3A1Q15459 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SF3A1Q15459 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SF3A1Q15459 HYMAI-201ENST00000635591 3347 ntBASIC18.97■□□□□ 0.63
SF3A1Q15459 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC18.97■□□□□ 0.63
SF3A1Q15459 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC18.97■□□□□ 0.63
SF3A1Q15459 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SF3A1Q15459 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SF3A1Q15459 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SF3A1Q15459 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SF3A1Q15459 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SF3A1Q15459 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SF3A1Q15459 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SF3A1Q15459 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
SF3A1Q15459 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SF3A1Q15459 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SF3A1Q15459 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SF3A1Q15459 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SF3A1Q15459 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
SF3A1Q15459 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SF3A1Q15459 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
SF3A1Q15459 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
SF3A1Q15459 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
SF3A1Q15459 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SF3A1Q15459 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SF3A1Q15459 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC18.96■□□□□ 0.63
SF3A1Q15459 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC18.96■□□□□ 0.63
SF3A1Q15459 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC18.96■□□□□ 0.63
SF3A1Q15459 PRSS29P-201ENST00000440800 595 ntBASIC18.96■□□□□ 0.63
SF3A1Q15459 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC18.96■□□□□ 0.63
SF3A1Q15459 UNC93B6-202ENST00000528242 690 ntBASIC18.96■□□□□ 0.63
SF3A1Q15459 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC18.96■□□□□ 0.63
SF3A1Q15459 MIR4515-201ENST00000584082 81 ntBASIC18.96■□□□□ 0.63
SF3A1Q15459 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC18.96■□□□□ 0.63
SF3A1Q15459 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC18.96■□□□□ 0.63
SF3A1Q15459 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SF3A1Q15459 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
SF3A1Q15459 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
SF3A1Q15459 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SF3A1Q15459 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC18.96■□□□□ 0.63
SF3A1Q15459 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SF3A1Q15459 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC18.96■□□□□ 0.63
SF3A1Q15459 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SF3A1Q15459 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC18.95■□□□□ 0.62
SF3A1Q15459 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
SF3A1Q15459 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC18.95■□□□□ 0.62
SF3A1Q15459 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC18.95■□□□□ 0.62
SF3A1Q15459 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SF3A1Q15459 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
SF3A1Q15459 REXO1L8P-201ENST00000604378 1897 ntBASIC18.95■□□□□ 0.62
SF3A1Q15459 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC18.95■□□□□ 0.62
SF3A1Q15459 PGR-209ENST00000617858 2816 ntTSL 5 BASIC18.95■□□□□ 0.62
SF3A1Q15459 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SF3A1Q15459 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SF3A1Q15459 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC18.95■□□□□ 0.62
SF3A1Q15459 AC009947.1-201ENST00000444350 727 ntBASIC18.95■□□□□ 0.62
SF3A1Q15459 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC18.95■□□□□ 0.62
SF3A1Q15459 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC18.95■□□□□ 0.62
SF3A1Q15459 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC18.95■□□□□ 0.62
SF3A1Q15459 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC18.95■□□□□ 0.62
SF3A1Q15459 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC18.95■□□□□ 0.62
SF3A1Q15459 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC18.95■□□□□ 0.62
SF3A1Q15459 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC18.95■□□□□ 0.62
SF3A1Q15459 SLC25A6P4-201ENST00000586535 553 ntBASIC18.95■□□□□ 0.62
SF3A1Q15459 AC020765.3-201ENST00000613051 740 ntBASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms