Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HMGCS1Q01581 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC15.82■□□□□ 0.12
HMGCS1Q01581 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC15.82■□□□□ 0.12
HMGCS1Q01581 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGCS1Q01581 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGCS1Q01581 MBP-202ENST00000355994 2772 ntTSL 5 BASIC15.81■□□□□ 0.12
HMGCS1Q01581 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
HMGCS1Q01581 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGCS1Q01581 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HMGCS1Q01581 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGCS1Q01581 LINC00554-201ENST00000564841 3011 ntBASIC15.81■□□□□ 0.12
HMGCS1Q01581 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC15.81■□□□□ 0.12
HMGCS1Q01581 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
HMGCS1Q01581 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
HMGCS1Q01581 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGCS1Q01581 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGCS1Q01581 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGCS1Q01581 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC15.81■□□□□ 0.12
HMGCS1Q01581 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGCS1Q01581 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HMGCS1Q01581 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGCS1Q01581 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGCS1Q01581 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGCS1Q01581 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
HMGCS1Q01581 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HMGCS1Q01581 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGCS1Q01581 CDC14C-201ENST00000428251 1719 ntBASIC15.81■□□□□ 0.12
HMGCS1Q01581 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC15.81■□□□□ 0.12
HMGCS1Q01581 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC15.81■□□□□ 0.12
HMGCS1Q01581 HCG4B-203ENST00000450128 991 ntBASIC15.81■□□□□ 0.12
HMGCS1Q01581 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HMGCS1Q01581 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
HMGCS1Q01581 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC15.81■□□□□ 0.12
HMGCS1Q01581 IGHV3-22-201ENST00000520721 359 ntBASIC15.81■□□□□ 0.12
HMGCS1Q01581 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGCS1Q01581 SLC9A7P1-201ENST00000554295 3311 ntBASIC15.81■□□□□ 0.12
HMGCS1Q01581 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HMGCS1Q01581 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC15.81■□□□□ 0.12
HMGCS1Q01581 TSPY26P-202ENST00000565928 3884 ntBASIC15.81■□□□□ 0.12
HMGCS1Q01581 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC15.81■□□□□ 0.12
HMGCS1Q01581 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HMGCS1Q01581 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGCS1Q01581 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC15.81■□□□□ 0.12
HMGCS1Q01581 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC15.81■□□□□ 0.12
HMGCS1Q01581 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC15.81■□□□□ 0.12
HMGCS1Q01581 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HMGCS1Q01581 AC010507.1-201ENST00000633895 436 ntBASIC15.81■□□□□ 0.12
HMGCS1Q01581 AL645728.2-201ENST00000641974 660 ntBASIC15.81■□□□□ 0.12
HMGCS1Q01581 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGCS1Q01581 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGCS1Q01581 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC15.81■□□□□ 0.12
HMGCS1Q01581 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
HMGCS1Q01581 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HMGCS1Q01581 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HMGCS1Q01581 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC15.81■□□□□ 0.12
HMGCS1Q01581 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC15.8■□□□□ 0.12
HMGCS1Q01581 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC15.8■□□□□ 0.12
HMGCS1Q01581 LINC02447-202ENST00000501888 2146 ntBASIC15.8■□□□□ 0.12
HMGCS1Q01581 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
HMGCS1Q01581 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGCS1Q01581 AP003680.1-201ENST00000598970 3660 ntBASIC15.8■□□□□ 0.12
HMGCS1Q01581 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGCS1Q01581 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HMGCS1Q01581 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC15.8■□□□□ 0.12
HMGCS1Q01581 AL592424.1-201ENST00000563624 1536 ntBASIC15.8■□□□□ 0.12
HMGCS1Q01581 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC15.8■□□□□ 0.12
HMGCS1Q01581 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGCS1Q01581 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGCS1Q01581 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGCS1Q01581 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGCS1Q01581 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGCS1Q01581 DDT-204ENST00000404092 805 ntTSL 3 BASIC15.8■□□□□ 0.12
HMGCS1Q01581 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC15.8■□□□□ 0.12
HMGCS1Q01581 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC15.8■□□□□ 0.12
HMGCS1Q01581 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
HMGCS1Q01581 AC079776.4-201ENST00000511039 504 ntBASIC15.8■□□□□ 0.12
HMGCS1Q01581 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
HMGCS1Q01581 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGCS1Q01581 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC15.8■□□□□ 0.12
HMGCS1Q01581 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGCS1Q01581 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
HMGCS1Q01581 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
HMGCS1Q01581 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HMGCS1Q01581 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
HMGCS1Q01581 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGCS1Q01581 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
HMGCS1Q01581 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HMGCS1Q01581 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HMGCS1Q01581 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC15.8■□□□□ 0.12
HMGCS1Q01581 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC15.8■□□□□ 0.12
HMGCS1Q01581 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGCS1Q01581 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HMGCS1Q01581 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGCS1Q01581 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC15.79■□□□□ 0.12
HMGCS1Q01581 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HMGCS1Q01581 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HMGCS1Q01581 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC15.79■□□□□ 0.12
HMGCS1Q01581 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGCS1Q01581 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC15.79■□□□□ 0.12
HMGCS1Q01581 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms