Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC15.46■□□□□ 0.07
RFX3P48380 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC15.46■□□□□ 0.07
RFX3P48380 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
RFX3P48380 MIR4515-201ENST00000584082 81 ntBASIC15.46■□□□□ 0.07
RFX3P48380 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC15.46■□□□□ 0.07
RFX3P48380 SIGLEC29P-201ENST00000599873 1114 ntBASIC15.46■□□□□ 0.07
RFX3P48380 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
RFX3P48380 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
RFX3P48380 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC15.46■□□□□ 0.07
RFX3P48380 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC15.46■□□□□ 0.07
RFX3P48380 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
RFX3P48380 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
RFX3P48380 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
RFX3P48380 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.06
RFX3P48380 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC15.46■□□□□ 0.06
RFX3P48380 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.06
RFX3P48380 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFX3P48380 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFX3P48380 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
RFX3P48380 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFX3P48380 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC15.45■□□□□ 0.06
RFX3P48380 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
RFX3P48380 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC15.45■□□□□ 0.06
RFX3P48380 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC15.45■□□□□ 0.06
RFX3P48380 KRT8P39-201ENST00000396270 1433 ntBASIC15.45■□□□□ 0.06
RFX3P48380 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC15.45■□□□□ 0.06
RFX3P48380 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFX3P48380 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFX3P48380 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFX3P48380 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFX3P48380 AC026691.1-201ENST00000602502 2017 ntBASIC15.45■□□□□ 0.06
RFX3P48380 SNX33P1-201ENST00000592116 1762 ntBASIC15.45■□□□□ 0.06
RFX3P48380 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
RFX3P48380 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFX3P48380 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC15.45■□□□□ 0.06
RFX3P48380 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC15.45■□□□□ 0.06
RFX3P48380 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC15.45■□□□□ 0.06
RFX3P48380 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC15.45■□□□□ 0.06
RFX3P48380 TEX30-205ENST00000376029 959 ntTSL 2 BASIC15.45■□□□□ 0.06
RFX3P48380 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFX3P48380 AL022342.1-201ENST00000400363 863 ntBASIC15.45■□□□□ 0.06
RFX3P48380 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
RFX3P48380 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
RFX3P48380 KRT18P2-201ENST00000447938 1258 ntBASIC15.45■□□□□ 0.06
RFX3P48380 HLA-J-202ENST00000469281 1241 ntBASIC15.45■□□□□ 0.06
RFX3P48380 RNA5SP416-201ENST00000516838 111 ntBASIC15.45■□□□□ 0.06
RFX3P48380 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC15.45■□□□□ 0.06
RFX3P48380 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC15.45■□□□□ 0.06
RFX3P48380 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFX3P48380 AC140113.2-201ENST00000604370 208 ntBASIC15.45■□□□□ 0.06
RFX3P48380 AC023141.13-201ENST00000604991 943 ntBASIC15.45■□□□□ 0.06
RFX3P48380 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
RFX3P48380 AC007064.4-201ENST00000637740 555 ntBASIC15.45■□□□□ 0.06
RFX3P48380 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC15.45■□□□□ 0.06
RFX3P48380 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFX3P48380 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFX3P48380 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
RFX3P48380 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
RFX3P48380 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
RFX3P48380 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
RFX3P48380 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFX3P48380 AL512652.2-201ENST00000625156 1716 ntBASIC15.45■□□□□ 0.06
RFX3P48380 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFX3P48380 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFX3P48380 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC15.45■□□□□ 0.06
RFX3P48380 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFX3P48380 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
RFX3P48380 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFX3P48380 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFX3P48380 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
RFX3P48380 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFX3P48380 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC15.45■□□□□ 0.06
RFX3P48380 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFX3P48380 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
RFX3P48380 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
RFX3P48380 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC15.44■□□□□ 0.06
RFX3P48380 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC15.44■□□□□ 0.06
RFX3P48380 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
RFX3P48380 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
RFX3P48380 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC15.44■□□□□ 0.06
RFX3P48380 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
RFX3P48380 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
RFX3P48380 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
RFX3P48380 AL031731.1-201ENST00000642131 2094 ntBASIC15.44■□□□□ 0.06
RFX3P48380 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC15.44■□□□□ 0.06
RFX3P48380 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
RFX3P48380 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
RFX3P48380 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC15.44■□□□□ 0.06
RFX3P48380 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
RFX3P48380 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
RFX3P48380 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
RFX3P48380 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
RFX3P48380 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC15.44■□□□□ 0.06
RFX3P48380 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC15.44■□□□□ 0.06
RFX3P48380 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC15.44■□□□□ 0.06
RFX3P48380 AC096734.2-201ENST00000562054 433 ntBASIC15.44■□□□□ 0.06
RFX3P48380 AC106730.1-201ENST00000566722 1090 ntBASIC15.44■□□□□ 0.06
RFX3P48380 PIN1-206ENST00000587625 878 ntTSL 2 BASIC15.44■□□□□ 0.06
RFX3P48380 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC15.44■□□□□ 0.06
RFX3P48380 AC004877.2-201ENST00000623941 599 ntBASIC15.44■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms