Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CXCL12P48061 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CXCL12P48061 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC16.13■□□□□ 0.17
CXCL12P48061 RPL28-203ENST00000428193 573 ntTSL 2 BASIC16.13■□□□□ 0.17
CXCL12P48061 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CXCL12P48061 NME4-207ENST00000450036 985 ntTSL 3 BASIC16.13■□□□□ 0.17
CXCL12P48061 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC16.13■□□□□ 0.17
CXCL12P48061 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC16.13■□□□□ 0.17
CXCL12P48061 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC16.13■□□□□ 0.17
CXCL12P48061 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC16.13■□□□□ 0.17
CXCL12P48061 RPL28-207ENST00000558815 616 ntTSL 2 BASIC16.13■□□□□ 0.17
CXCL12P48061 AL359711.2-201ENST00000563105 872 ntBASIC16.13■□□□□ 0.17
CXCL12P48061 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC16.13■□□□□ 0.17
CXCL12P48061 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CXCL12P48061 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC16.13■□□□□ 0.17
CXCL12P48061 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CXCL12P48061 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC16.13■□□□□ 0.17
CXCL12P48061 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC16.13■□□□□ 0.17
CXCL12P48061 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CXCL12P48061 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
CXCL12P48061 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC16.13■□□□□ 0.17
CXCL12P48061 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CXCL12P48061 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CXCL12P48061 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
CXCL12P48061 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CXCL12P48061 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
CXCL12P48061 AL390961.4-201ENST00000623958 2535 ntBASIC16.13■□□□□ 0.17
CXCL12P48061 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CXCL12P48061 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC16.13■□□□□ 0.17
CXCL12P48061 AC005622.1-201ENST00000636801 1703 ntBASIC16.13■□□□□ 0.17
CXCL12P48061 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CXCL12P48061 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC16.13■□□□□ 0.17
CXCL12P48061 HNRNPA1P48-201ENST00000562726 1377 ntBASIC16.13■□□□□ 0.17
CXCL12P48061 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
CXCL12P48061 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CXCL12P48061 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
CXCL12P48061 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CXCL12P48061 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CXCL12P48061 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.12■□□□□ 0.17
CXCL12P48061 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CXCL12P48061 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC16.12■□□□□ 0.17
CXCL12P48061 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC16.12■□□□□ 0.17
CXCL12P48061 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CXCL12P48061 U82695.1-201ENST00000635752 1889 ntBASIC16.12■□□□□ 0.17
CXCL12P48061 AC067852.2-201ENST00000590513 2313 ntBASIC16.12■□□□□ 0.17
CXCL12P48061 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CXCL12P48061 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.12■□□□□ 0.17
CXCL12P48061 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CXCL12P48061 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC16.12■□□□□ 0.17
CXCL12P48061 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CXCL12P48061 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CXCL12P48061 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
CXCL12P48061 GGT4P-201ENST00000623672 1708 ntBASIC16.12■□□□□ 0.17
CXCL12P48061 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
CXCL12P48061 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC16.12■□□□□ 0.17
CXCL12P48061 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CXCL12P48061 AL355864.2-201ENST00000447420 863 ntBASIC16.12■□□□□ 0.17
CXCL12P48061 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CXCL12P48061 FAM86LP-201ENST00000478302 853 ntBASIC16.12■□□□□ 0.17
CXCL12P48061 AC108725.1-201ENST00000495472 409 ntBASIC16.12■□□□□ 0.17
CXCL12P48061 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC16.12■□□□□ 0.17
CXCL12P48061 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
CXCL12P48061 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CXCL12P48061 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CXCL12P48061 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
CXCL12P48061 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CXCL12P48061 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC16.12■□□□□ 0.17
CXCL12P48061 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC16.12■□□□□ 0.17
CXCL12P48061 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
CXCL12P48061 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC16.12■□□□□ 0.17
CXCL12P48061 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CXCL12P48061 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CXCL12P48061 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
CXCL12P48061 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CXCL12P48061 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CXCL12P48061 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CXCL12P48061 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC16.12■□□□□ 0.17
CXCL12P48061 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CXCL12P48061 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC16.12■□□□□ 0.17
CXCL12P48061 CD276-203ENST00000537340 2439 ntTSL 2 BASIC16.11■□□□□ 0.17
CXCL12P48061 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CXCL12P48061 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
CXCL12P48061 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
CXCL12P48061 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC16.11■□□□□ 0.17
CXCL12P48061 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC16.11■□□□□ 0.17
CXCL12P48061 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CXCL12P48061 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CXCL12P48061 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CXCL12P48061 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC16.11■□□□□ 0.17
CXCL12P48061 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CXCL12P48061 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
CXCL12P48061 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
CXCL12P48061 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CXCL12P48061 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CXCL12P48061 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
CXCL12P48061 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC16.11■□□□□ 0.17
CXCL12P48061 PKIG-203ENST00000372887 769 ntTSL 3 BASIC16.11■□□□□ 0.17
CXCL12P48061 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CXCL12P48061 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CXCL12P48061 AC007551.1-201ENST00000457394 519 ntBASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms