Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN9P43378 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC16.98■□□□□ 0.31
PTPN9P43378 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN9P43378 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN9P43378 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN9P43378 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC16.98■□□□□ 0.31
PTPN9P43378 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN9P43378 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN9P43378 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN9P43378 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC16.98■□□□□ 0.31
PTPN9P43378 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
PTPN9P43378 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN9P43378 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN9P43378 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC16.98■□□□□ 0.31
PTPN9P43378 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN9P43378 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN9P43378 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC16.98■□□□□ 0.31
PTPN9P43378 AC004461.1-201ENST00000412461 403 ntBASIC16.98■□□□□ 0.31
PTPN9P43378 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC16.98■□□□□ 0.31
PTPN9P43378 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC16.98■□□□□ 0.31
PTPN9P43378 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
PTPN9P43378 DHDH-204ENST00000523250 634 ntTSL 5 BASIC16.98■□□□□ 0.31
PTPN9P43378 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC16.98■□□□□ 0.31
PTPN9P43378 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC16.98■□□□□ 0.31
PTPN9P43378 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC16.98■□□□□ 0.31
PTPN9P43378 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC16.98■□□□□ 0.31
PTPN9P43378 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN9P43378 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC16.98■□□□□ 0.31
PTPN9P43378 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
PTPN9P43378 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN9P43378 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN9P43378 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN9P43378 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN9P43378 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC16.98■□□□□ 0.31
PTPN9P43378 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC16.98■□□□□ 0.31
PTPN9P43378 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
PTPN9P43378 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN9P43378 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN9P43378 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN9P43378 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN9P43378 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN9P43378 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
PTPN9P43378 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN9P43378 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN9P43378 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN9P43378 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN9P43378 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN9P43378 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN9P43378 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN9P43378 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC16.97■□□□□ 0.31
PTPN9P43378 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN9P43378 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN9P43378 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16.97■□□□□ 0.31
PTPN9P43378 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.97■□□□□ 0.31
PTPN9P43378 PCDHA1-201ENST00000378133 2726 ntBASIC16.97■□□□□ 0.31
PTPN9P43378 AC024909.3-201ENST00000611513 2257 ntBASIC16.97■□□□□ 0.31
PTPN9P43378 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN9P43378 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN9P43378 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN9P43378 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC16.97■□□□□ 0.31
PTPN9P43378 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC16.97■□□□□ 0.31
PTPN9P43378 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC16.97■□□□□ 0.31
PTPN9P43378 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC16.97■□□□□ 0.31
PTPN9P43378 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN9P43378 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC16.97■□□□□ 0.31
PTPN9P43378 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC16.97■□□□□ 0.31
PTPN9P43378 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC16.97■□□□□ 0.31
PTPN9P43378 AC055717.3-201ENST00000622967 595 ntBASIC16.97■□□□□ 0.31
PTPN9P43378 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN9P43378 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC16.97■□□□□ 0.31
PTPN9P43378 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
PTPN9P43378 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN9P43378 AC008677.1-201ENST00000519230 1561 ntBASIC16.97■□□□□ 0.31
PTPN9P43378 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC16.97■□□□□ 0.31
PTPN9P43378 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
PTPN9P43378 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN9P43378 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC16.97■□□□□ 0.31
PTPN9P43378 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC16.97■□□□□ 0.31
PTPN9P43378 PGR-209ENST00000617858 2816 ntTSL 5 BASIC16.97■□□□□ 0.31
PTPN9P43378 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN9P43378 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.97■□□□□ 0.31
PTPN9P43378 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
PTPN9P43378 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTPN9P43378 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PTPN9P43378 UXT-AS1-201ENST00000590504 1525 ntBASIC16.96■□□□□ 0.31
PTPN9P43378 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTPN9P43378 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTPN9P43378 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTPN9P43378 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTPN9P43378 AC069224.1-201ENST00000566372 1715 ntBASIC16.96■□□□□ 0.31
PTPN9P43378 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC16.96■□□□□ 0.31
PTPN9P43378 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC16.96■□□□□ 0.31
PTPN9P43378 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTPN9P43378 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTPN9P43378 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.31
PTPN9P43378 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC16.96■□□□□ 0.31
PTPN9P43378 HLA-H-201ENST00000383620 1096 ntBASIC16.96■□□□□ 0.31
PTPN9P43378 HAUS4P1-201ENST00000406739 1145 ntBASIC16.96■□□□□ 0.31
PTPN9P43378 AC211486.1-202ENST00000416371 468 ntBASIC16.96■□□□□ 0.31
PTPN9P43378 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms