Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 AC091812.3-201ENST00000621362 345 ntBASIC18.03■□□□□ 0.48
HTTP42858 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
HTTP42858 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HTTP42858 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.02■□□□□ 0.48
HTTP42858 AC016700.1-201ENST00000429424 312 ntBASIC18.02■□□□□ 0.48
HTTP42858 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
HTTP42858 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC18.02■□□□□ 0.48
HTTP42858 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
HTTP42858 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC18.02■□□□□ 0.48
HTTP42858 AF254983.2-201ENST00000612331 135 ntBASIC18.02■□□□□ 0.48
HTTP42858 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC18.02■□□□□ 0.48
HTTP42858 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HTTP42858 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HTTP42858 AC134043.2-201ENST00000624206 2238 ntBASIC18.02■□□□□ 0.48
HTTP42858 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
HTTP42858 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
HTTP42858 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC18.02■□□□□ 0.47
HTTP42858 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.02■□□□□ 0.47
HTTP42858 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
HTTP42858 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC18.02■□□□□ 0.47
HTTP42858 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC18.02■□□□□ 0.47
HTTP42858 PTK2-225ENST00000520892 571 ntTSL 4 BASIC18.02■□□□□ 0.47
HTTP42858 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC18.02■□□□□ 0.47
HTTP42858 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC18.02■□□□□ 0.47
HTTP42858 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
HTTP42858 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
HTTP42858 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.01■□□□□ 0.47
HTTP42858 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC18.01■□□□□ 0.47
HTTP42858 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC18.01■□□□□ 0.47
HTTP42858 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HTTP42858 GUK1-206ENST00000366723 845 ntTSL 5 BASIC18.01■□□□□ 0.47
HTTP42858 AC074338.1-201ENST00000416825 156 ntBASIC18.01■□□□□ 0.47
HTTP42858 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HTTP42858 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HTTP42858 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC18.01■□□□□ 0.47
HTTP42858 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC18.01■□□□□ 0.47
HTTP42858 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC18.01■□□□□ 0.47
HTTP42858 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
HTTP42858 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HTTP42858 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HTTP42858 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC18.01■□□□□ 0.47
HTTP42858 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
HTTP42858 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
HTTP42858 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
HTTP42858 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC18.01■□□□□ 0.47
HTTP42858 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC18.01■□□□□ 0.47
HTTP42858 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC18.01■□□□□ 0.47
HTTP42858 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HTTP42858 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
HTTP42858 GRN-214ENST00000589265 1632 ntTSL 5 BASIC18.01■□□□□ 0.47
HTTP42858 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HTTP42858 AC006001.1-201ENST00000325130 474 ntBASIC18.01■□□□□ 0.47
HTTP42858 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
HTTP42858 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC18.01■□□□□ 0.47
HTTP42858 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC18.01■□□□□ 0.47
HTTP42858 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC18■□□□□ 0.47
HTTP42858 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC18■□□□□ 0.47
HTTP42858 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC18■□□□□ 0.47
HTTP42858 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC18■□□□□ 0.47
HTTP42858 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HTTP42858 UBALD1-205ENST00000590891 2641 ntBASIC18■□□□□ 0.47
HTTP42858 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18■□□□□ 0.47
HTTP42858 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HTTP42858 SDCCAG3P2-201ENST00000326105 1023 ntBASIC18■□□□□ 0.47
HTTP42858 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
HTTP42858 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC18■□□□□ 0.47
HTTP42858 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC18■□□□□ 0.47
HTTP42858 TOMM22P5-201ENST00000416399 439 ntBASIC18■□□□□ 0.47
HTTP42858 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC18■□□□□ 0.47
HTTP42858 AC025279.2-201ENST00000569730 653 ntBASIC18■□□□□ 0.47
HTTP42858 AL451050.2-201ENST00000606967 682 ntBASIC18■□□□□ 0.47
HTTP42858 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC18■□□□□ 0.47
HTTP42858 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
HTTP42858 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HTTP42858 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HTTP42858 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC18■□□□□ 0.47
HTTP42858 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HTTP42858 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC18■□□□□ 0.47
HTTP42858 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
HTTP42858 AHCYP2-201ENST00000430630 1300 ntBASIC18■□□□□ 0.47
HTTP42858 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC18■□□□□ 0.47
HTTP42858 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC18■□□□□ 0.47
HTTP42858 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC18■□□□□ 0.47
HTTP42858 FTLP1-201ENST00000449155 526 ntBASIC18■□□□□ 0.47
HTTP42858 RPSAP36-202ENST00000494591 1261 ntBASIC18■□□□□ 0.47
HTTP42858 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC18■□□□□ 0.47
HTTP42858 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC18■□□□□ 0.47
HTTP42858 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC18■□□□□ 0.47
HTTP42858 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC18■□□□□ 0.47
HTTP42858 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
HTTP42858 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HTTP42858 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
HTTP42858 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HTTP42858 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC17.99■□□□□ 0.47
HTTP42858 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HTTP42858 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC17.99■□□□□ 0.47
HTTP42858 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HTTP42858 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HTTP42858 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HTTP42858 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms