Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC16.7■□□□□ 0.26
COL9A1P20849 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL9A1P20849 AL008638.5-201ENST00000623814 1298 ntBASIC16.7■□□□□ 0.26
COL9A1P20849 AC004461.2-201ENST00000629517 803 ntBASIC16.7■□□□□ 0.26
COL9A1P20849 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL9A1P20849 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL9A1P20849 PP12613-201ENST00000424958 2230 ntBASIC16.7■□□□□ 0.26
COL9A1P20849 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
COL9A1P20849 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL9A1P20849 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.7■□□□□ 0.26
COL9A1P20849 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
COL9A1P20849 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
COL9A1P20849 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL9A1P20849 TUBB8P12-201ENST00000308911 1335 ntBASIC16.7■□□□□ 0.26
COL9A1P20849 TUBB7P-202ENST00000428444 1305 ntBASIC16.7■□□□□ 0.26
COL9A1P20849 TUBB8P7-204ENST00000567960 1332 ntBASIC16.7■□□□□ 0.26
COL9A1P20849 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL9A1P20849 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL9A1P20849 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC16.69■□□□□ 0.26
COL9A1P20849 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC16.69■□□□□ 0.26
COL9A1P20849 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC16.69■□□□□ 0.26
COL9A1P20849 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL9A1P20849 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
COL9A1P20849 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL9A1P20849 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL9A1P20849 NOC2LP2-201ENST00000407594 1944 ntBASIC16.69■□□□□ 0.26
COL9A1P20849 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.69■□□□□ 0.26
COL9A1P20849 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.69■□□□□ 0.26
COL9A1P20849 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL9A1P20849 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL9A1P20849 HLA-H-201ENST00000383620 1096 ntBASIC16.69■□□□□ 0.26
COL9A1P20849 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.69■□□□□ 0.26
COL9A1P20849 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL9A1P20849 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL9A1P20849 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL9A1P20849 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL9A1P20849 AL589987.1-201ENST00000453380 819 ntBASIC16.69■□□□□ 0.26
COL9A1P20849 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC16.69■□□□□ 0.26
COL9A1P20849 FTH1-202ENST00000526640 786 ntTSL 2 BASIC16.69■□□□□ 0.26
COL9A1P20849 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL9A1P20849 PGAM1P5-201ENST00000548011 764 ntBASIC16.69■□□□□ 0.26
COL9A1P20849 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC16.69■□□□□ 0.26
COL9A1P20849 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC16.69■□□□□ 0.26
COL9A1P20849 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC16.69■□□□□ 0.26
COL9A1P20849 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC16.69■□□□□ 0.26
COL9A1P20849 KC6-205ENST00000599934 556 ntTSL 4 BASIC16.69■□□□□ 0.26
COL9A1P20849 AC097724.1-201ENST00000609581 426 ntBASIC16.69■□□□□ 0.26
COL9A1P20849 PRKN-211ENST00000615065 261 ntTSL 5 BASIC16.69■□□□□ 0.26
COL9A1P20849 AC068880.1-201ENST00000507289 2297 ntBASIC16.69■□□□□ 0.26
COL9A1P20849 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
COL9A1P20849 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL9A1P20849 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL9A1P20849 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL9A1P20849 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL9A1P20849 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL9A1P20849 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL9A1P20849 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL9A1P20849 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC16.68■□□□□ 0.26
COL9A1P20849 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
COL9A1P20849 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL9A1P20849 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL9A1P20849 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
COL9A1P20849 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC16.68■□□□□ 0.26
COL9A1P20849 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
COL9A1P20849 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.68■□□□□ 0.26
COL9A1P20849 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
COL9A1P20849 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
COL9A1P20849 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL9A1P20849 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC16.68■□□□□ 0.26
COL9A1P20849 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL9A1P20849 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC16.68■□□□□ 0.26
COL9A1P20849 AC091804.1-201ENST00000486888 567 ntBASIC16.68■□□□□ 0.26
COL9A1P20849 AC104596.2-201ENST00000512793 793 ntBASIC16.68■□□□□ 0.26
COL9A1P20849 AC245884.6-201ENST00000515672 1067 ntBASIC16.68■□□□□ 0.26
COL9A1P20849 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
COL9A1P20849 TDH-203ENST00000531764 1110 ntBASIC16.68■□□□□ 0.26
COL9A1P20849 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
COL9A1P20849 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC16.68■□□□□ 0.26
COL9A1P20849 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC16.68■□□□□ 0.26
COL9A1P20849 AC013467.2-201ENST00000605472 835 ntBASIC16.68■□□□□ 0.26
COL9A1P20849 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC16.68■□□□□ 0.26
COL9A1P20849 AC018635.2-201ENST00000608625 364 ntBASIC16.68■□□□□ 0.26
COL9A1P20849 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC16.68■□□□□ 0.26
COL9A1P20849 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
COL9A1P20849 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL9A1P20849 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
COL9A1P20849 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL9A1P20849 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.68■□□□□ 0.26
COL9A1P20849 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
COL9A1P20849 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC16.68■□□□□ 0.26
COL9A1P20849 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
COL9A1P20849 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC16.68■□□□□ 0.26
COL9A1P20849 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL9A1P20849 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL9A1P20849 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL9A1P20849 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC16.67■□□□□ 0.26
COL9A1P20849 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL9A1P20849 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL9A1P20849 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC16.67■□□□□ 0.26
COL9A1P20849 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms