Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC21.52■■□□□ 1.04
CSB-PGBD3P0DP91 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC21.52■■□□□ 1.04
CSB-PGBD3P0DP91 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC21.52■■□□□ 1.04
CSB-PGBD3P0DP91 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CSB-PGBD3P0DP91 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CSB-PGBD3P0DP91 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
CSB-PGBD3P0DP91 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
CSB-PGBD3P0DP91 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
CSB-PGBD3P0DP91 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CSB-PGBD3P0DP91 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
CSB-PGBD3P0DP91 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CSB-PGBD3P0DP91 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
CSB-PGBD3P0DP91 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC21.51■■□□□ 1.03
CSB-PGBD3P0DP91 AC018665.1-201ENST00000622927 1362 ntBASIC21.51■■□□□ 1.03
CSB-PGBD3P0DP91 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CSB-PGBD3P0DP91 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC21.51■■□□□ 1.03
CSB-PGBD3P0DP91 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC21.51■■□□□ 1.03
CSB-PGBD3P0DP91 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
CSB-PGBD3P0DP91 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
CSB-PGBD3P0DP91 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
CSB-PGBD3P0DP91 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC21.51■■□□□ 1.03
CSB-PGBD3P0DP91 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC21.51■■□□□ 1.03
CSB-PGBD3P0DP91 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC21.51■■□□□ 1.03
CSB-PGBD3P0DP91 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC21.51■■□□□ 1.03
CSB-PGBD3P0DP91 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC21.51■■□□□ 1.03
CSB-PGBD3P0DP91 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC21.51■■□□□ 1.03
CSB-PGBD3P0DP91 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC21.51■■□□□ 1.03
CSB-PGBD3P0DP91 RPS24-214ENST00000613865 538 ntTSL 5 BASIC21.51■■□□□ 1.03
CSB-PGBD3P0DP91 WNT11-204ENST00000621122 789 ntTSL 5 BASIC21.51■■□□□ 1.03
CSB-PGBD3P0DP91 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CSB-PGBD3P0DP91 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
CSB-PGBD3P0DP91 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CSB-PGBD3P0DP91 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
CSB-PGBD3P0DP91 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
CSB-PGBD3P0DP91 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CSB-PGBD3P0DP91 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC21.51■■□□□ 1.03
CSB-PGBD3P0DP91 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
CSB-PGBD3P0DP91 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CSB-PGBD3P0DP91 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
CSB-PGBD3P0DP91 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CSB-PGBD3P0DP91 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
CSB-PGBD3P0DP91 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CSB-PGBD3P0DP91 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CSB-PGBD3P0DP91 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC21.5■■□□□ 1.03
CSB-PGBD3P0DP91 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CSB-PGBD3P0DP91 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC21.5■■□□□ 1.03
CSB-PGBD3P0DP91 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
CSB-PGBD3P0DP91 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC21.5■■□□□ 1.03
CSB-PGBD3P0DP91 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC21.5■■□□□ 1.03
CSB-PGBD3P0DP91 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CSB-PGBD3P0DP91 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC21.5■■□□□ 1.03
CSB-PGBD3P0DP91 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
CSB-PGBD3P0DP91 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CSB-PGBD3P0DP91 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC21.5■■□□□ 1.03
CSB-PGBD3P0DP91 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CSB-PGBD3P0DP91 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC21.5■■□□□ 1.03
CSB-PGBD3P0DP91 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC21.5■■□□□ 1.03
CSB-PGBD3P0DP91 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC21.5■■□□□ 1.03
CSB-PGBD3P0DP91 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
CSB-PGBD3P0DP91 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CSB-PGBD3P0DP91 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
CSB-PGBD3P0DP91 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
CSB-PGBD3P0DP91 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CSB-PGBD3P0DP91 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CSB-PGBD3P0DP91 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CSB-PGBD3P0DP91 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
CSB-PGBD3P0DP91 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CSB-PGBD3P0DP91 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CSB-PGBD3P0DP91 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CSB-PGBD3P0DP91 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC21.49■■□□□ 1.03
CSB-PGBD3P0DP91 AC005622.1-201ENST00000636801 1703 ntBASIC21.49■■□□□ 1.03
CSB-PGBD3P0DP91 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC21.49■■□□□ 1.03
CSB-PGBD3P0DP91 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CSB-PGBD3P0DP91 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CSB-PGBD3P0DP91 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC21.49■■□□□ 1.03
CSB-PGBD3P0DP91 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CSB-PGBD3P0DP91 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CSB-PGBD3P0DP91 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
CSB-PGBD3P0DP91 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC21.49■■□□□ 1.03
CSB-PGBD3P0DP91 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC21.49■■□□□ 1.03
CSB-PGBD3P0DP91 USP32P1-208ENST00000506594 1164 ntBASIC21.49■■□□□ 1.03
CSB-PGBD3P0DP91 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC21.49■■□□□ 1.03
CSB-PGBD3P0DP91 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC21.49■■□□□ 1.03
CSB-PGBD3P0DP91 RN7SL219P-201ENST00000582872 296 ntBASIC21.49■■□□□ 1.03
CSB-PGBD3P0DP91 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC21.49■■□□□ 1.03
CSB-PGBD3P0DP91 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC21.49■■□□□ 1.03
CSB-PGBD3P0DP91 PFAS-212ENST00000625942 396 ntTSL 5 BASIC21.49■■□□□ 1.03
CSB-PGBD3P0DP91 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
CSB-PGBD3P0DP91 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CSB-PGBD3P0DP91 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
CSB-PGBD3P0DP91 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
CSB-PGBD3P0DP91 PCGF3-213ENST00000620529 1899 ntBASIC21.49■■□□□ 1.03
CSB-PGBD3P0DP91 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CSB-PGBD3P0DP91 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CSB-PGBD3P0DP91 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC21.49■■□□□ 1.03
CSB-PGBD3P0DP91 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CSB-PGBD3P0DP91 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CSB-PGBD3P0DP91 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CSB-PGBD3P0DP91 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
CSB-PGBD3P0DP91 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms