Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS4BO75351 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS4BO75351 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS4BO75351 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS4BO75351 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
VPS4BO75351 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS4BO75351 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VPS4BO75351 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC16.11■□□□□ 0.17
VPS4BO75351 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS4BO75351 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC16.11■□□□□ 0.17
VPS4BO75351 AC024909.3-201ENST00000611513 2257 ntBASIC16.11■□□□□ 0.17
VPS4BO75351 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC16.11■□□□□ 0.17
VPS4BO75351 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC16.11■□□□□ 0.17
VPS4BO75351 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS4BO75351 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VPS4BO75351 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VPS4BO75351 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS4BO75351 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS4BO75351 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VPS4BO75351 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC16.11■□□□□ 0.17
VPS4BO75351 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC16.11■□□□□ 0.17
VPS4BO75351 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VPS4BO75351 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VPS4BO75351 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC16.11■□□□□ 0.17
VPS4BO75351 CNN2P11-201ENST00000429351 262 ntBASIC16.11■□□□□ 0.17
VPS4BO75351 YBX1P5-201ENST00000509441 847 ntBASIC16.11■□□□□ 0.17
VPS4BO75351 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC16.11■□□□□ 0.17
VPS4BO75351 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC16.11■□□□□ 0.17
VPS4BO75351 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS4BO75351 COX5A-206ENST00000568783 571 ntTSL 3 BASIC16.11■□□□□ 0.17
VPS4BO75351 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.11■□□□□ 0.17
VPS4BO75351 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC16.11■□□□□ 0.17
VPS4BO75351 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS4BO75351 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS4BO75351 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS4BO75351 PCGF3-213ENST00000620529 1899 ntBASIC16.11■□□□□ 0.17
VPS4BO75351 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC16.11■□□□□ 0.17
VPS4BO75351 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC16.11■□□□□ 0.17
VPS4BO75351 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC16.11■□□□□ 0.17
VPS4BO75351 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS4BO75351 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
VPS4BO75351 AC131009.4-201ENST00000624048 1740 ntBASIC16.11■□□□□ 0.17
VPS4BO75351 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS4BO75351 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS4BO75351 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VPS4BO75351 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS4BO75351 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC16.1■□□□□ 0.17
VPS4BO75351 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS4BO75351 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.1■□□□□ 0.17
VPS4BO75351 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC16.1■□□□□ 0.17
VPS4BO75351 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
VPS4BO75351 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS4BO75351 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.1■□□□□ 0.17
VPS4BO75351 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS4BO75351 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS4BO75351 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS4BO75351 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS4BO75351 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS4BO75351 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC16.1■□□□□ 0.17
VPS4BO75351 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC16.1■□□□□ 0.17
VPS4BO75351 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC16.1■□□□□ 0.17
VPS4BO75351 AC106028.4-201ENST00000614509 607 ntBASIC16.1■□□□□ 0.17
VPS4BO75351 REXO1L3P-201ENST00000622202 1288 ntBASIC16.1■□□□□ 0.17
VPS4BO75351 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC16.1■□□□□ 0.17
VPS4BO75351 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS4BO75351 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC16.1■□□□□ 0.17
VPS4BO75351 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VPS4BO75351 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
VPS4BO75351 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC16.1■□□□□ 0.17
VPS4BO75351 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS4BO75351 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS4BO75351 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS4BO75351 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VPS4BO75351 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
VPS4BO75351 GPAA1P2-202ENST00000606848 1787 ntBASIC16.1■□□□□ 0.17
VPS4BO75351 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS4BO75351 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VPS4BO75351 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS4BO75351 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS4BO75351 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.1■□□□□ 0.17
VPS4BO75351 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
VPS4BO75351 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VPS4BO75351 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.1■□□□□ 0.17
VPS4BO75351 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VPS4BO75351 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC16.09■□□□□ 0.17
VPS4BO75351 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VPS4BO75351 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
VPS4BO75351 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
VPS4BO75351 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VPS4BO75351 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
VPS4BO75351 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.09■□□□□ 0.17
VPS4BO75351 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC16.09■□□□□ 0.17
VPS4BO75351 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16.09■□□□□ 0.17
VPS4BO75351 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VPS4BO75351 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC16.09■□□□□ 0.17
VPS4BO75351 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC16.09■□□□□ 0.17
VPS4BO75351 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VPS4BO75351 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VPS4BO75351 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC16.09■□□□□ 0.17
VPS4BO75351 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms