Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 TTTY23B-201ENST00000442790 549 ntBASIC17.06■□□□□ 0.32
LIMD1Q9UGP4 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIMD1Q9UGP4 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC17.06■□□□□ 0.32
LIMD1Q9UGP4 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC17.06■□□□□ 0.32
LIMD1Q9UGP4 SPDYE18-201ENST00000510091 1050 ntBASIC17.06■□□□□ 0.32
LIMD1Q9UGP4 RAB35-202ENST00000534951 939 ntTSL 2 BASIC17.06■□□□□ 0.32
LIMD1Q9UGP4 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LIMD1Q9UGP4 MIR4259-201ENST00000584466 101 ntBASIC17.06■□□□□ 0.32
LIMD1Q9UGP4 TEX48-202ENST00000612244 662 ntTSL 3 BASIC17.06■□□□□ 0.32
LIMD1Q9UGP4 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
LIMD1Q9UGP4 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIMD1Q9UGP4 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIMD1Q9UGP4 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC17.06■□□□□ 0.32
LIMD1Q9UGP4 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIMD1Q9UGP4 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LIMD1Q9UGP4 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
LIMD1Q9UGP4 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LIMD1Q9UGP4 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIMD1Q9UGP4 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIMD1Q9UGP4 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIMD1Q9UGP4 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.06■□□□□ 0.32
LIMD1Q9UGP4 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
LIMD1Q9UGP4 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
LIMD1Q9UGP4 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.06■□□□□ 0.32
LIMD1Q9UGP4 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIMD1Q9UGP4 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 AL512361.1-201ENST00000554200 418 ntBASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 AL512343.1-201ENST00000605837 169 ntBASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 NF2-208ENST00000403435 2568 ntTSL 5 BASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 FRMD8P1-201ENST00000440433 1524 ntBASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIMD1Q9UGP4 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LIMD1Q9UGP4 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIMD1Q9UGP4 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIMD1Q9UGP4 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LIMD1Q9UGP4 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.04■□□□□ 0.32
LIMD1Q9UGP4 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
LIMD1Q9UGP4 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIMD1Q9UGP4 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIMD1Q9UGP4 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LIMD1Q9UGP4 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIMD1Q9UGP4 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIMD1Q9UGP4 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC17.04■□□□□ 0.32
LIMD1Q9UGP4 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.04■□□□□ 0.32
LIMD1Q9UGP4 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC17.04■□□□□ 0.32
LIMD1Q9UGP4 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
LIMD1Q9UGP4 YIPF7-202ENST00000415895 1196 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
LIMD1Q9UGP4 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC17.04■□□□□ 0.32
LIMD1Q9UGP4 MYCLP2-201ENST00000449268 967 ntBASIC17.04■□□□□ 0.32
LIMD1Q9UGP4 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC17.04■□□□□ 0.32
LIMD1Q9UGP4 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC17.04■□□□□ 0.32
LIMD1Q9UGP4 AC092552.1-201ENST00000547243 906 ntBASIC17.04■□□□□ 0.32
LIMD1Q9UGP4 QPRT-203ENST00000562473 579 ntTSL 3 BASIC17.04■□□□□ 0.32
LIMD1Q9UGP4 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LIMD1Q9UGP4 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LIMD1Q9UGP4 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC17.04■□□□□ 0.32
LIMD1Q9UGP4 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
LIMD1Q9UGP4 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC17.04■□□□□ 0.32
LIMD1Q9UGP4 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LIMD1Q9UGP4 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIMD1Q9UGP4 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIMD1Q9UGP4 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC17.03■□□□□ 0.32
LIMD1Q9UGP4 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
LIMD1Q9UGP4 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC17.03■□□□□ 0.32
LIMD1Q9UGP4 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC17.03■□□□□ 0.32
LIMD1Q9UGP4 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms