Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 LINC00895-201ENST00000629028 1637 ntBASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 OR2I1P-210ENST00000642037 4691 ntBASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 AL591684.3-201ENST00000605187 298 ntBASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 ABBA01031661.1-201ENST00000634362 1253 ntBASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 SIGLEC16-201ENST00000599858 1437 ntBASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 TLE1-202ENST00000376484 666 ntTSL 3 BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 AC012615.1-201ENST00000565797 1299 ntBASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 CYB561-217ENST00000582997 877 ntTSL 5 BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 BCL10-202ENST00000620248 774 ntTSL 5 BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 AL590326.2-201ENST00000625139 305 ntBASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 AC079776.2-201ENST00000641154 1609 ntBASIC14.19□□□□□ -0.14
CHMP1AQ9HD42 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CHMP1AQ9HD42 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms