Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 LINC02447-202ENST00000501888 2146 ntBASIC16.96■□□□□ 0.3
PCDH9Q9HC56 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.96■□□□□ 0.3
PCDH9Q9HC56 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.3
PCDH9Q9HC56 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
PCDH9Q9HC56 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PCDH9Q9HC56 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PCDH9Q9HC56 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
PCDH9Q9HC56 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.95■□□□□ 0.3
PCDH9Q9HC56 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
PCDH9Q9HC56 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PCDH9Q9HC56 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.95■□□□□ 0.3
PCDH9Q9HC56 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
PCDH9Q9HC56 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PCDH9Q9HC56 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.95■□□□□ 0.3
PCDH9Q9HC56 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PCDH9Q9HC56 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PCDH9Q9HC56 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.95■□□□□ 0.3
PCDH9Q9HC56 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
PCDH9Q9HC56 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
PCDH9Q9HC56 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
PCDH9Q9HC56 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PCDH9Q9HC56 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PCDH9Q9HC56 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PCDH9Q9HC56 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
PCDH9Q9HC56 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
PCDH9Q9HC56 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.95■□□□□ 0.3
PCDH9Q9HC56 MIR648-201ENST00000385046 94 ntBASIC16.95■□□□□ 0.3
PCDH9Q9HC56 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC16.95■□□□□ 0.3
PCDH9Q9HC56 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC16.95■□□□□ 0.3
PCDH9Q9HC56 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
PCDH9Q9HC56 AC023141.13-201ENST00000604991 943 ntBASIC16.95■□□□□ 0.3
PCDH9Q9HC56 AC004877.2-201ENST00000623941 599 ntBASIC16.95■□□□□ 0.3
PCDH9Q9HC56 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PCDH9Q9HC56 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PCDH9Q9HC56 AC112504.1-201ENST00000623415 1841 ntBASIC16.95■□□□□ 0.3
PCDH9Q9HC56 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PCDH9Q9HC56 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
PCDH9Q9HC56 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PCDH9Q9HC56 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
PCDH9Q9HC56 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 AC069224.1-201ENST00000566372 1715 ntBASIC16.94■□□□□ 0.3
PCDH9Q9HC56 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 AL645728.2-201ENST00000641974 660 ntBASIC16.94■□□□□ 0.3
PCDH9Q9HC56 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 AL592424.1-201ENST00000563624 1536 ntBASIC16.94■□□□□ 0.3
PCDH9Q9HC56 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 AP005117.1-202ENST00000581724 1908 ntBASIC16.94■□□□□ 0.3
PCDH9Q9HC56 BCAR1-209ENST00000546196 1340 ntBASIC16.94■□□□□ 0.3
PCDH9Q9HC56 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDH9Q9HC56 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.93■□□□□ 0.3
PCDH9Q9HC56 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC16.93■□□□□ 0.3
PCDH9Q9HC56 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
PCDH9Q9HC56 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC16.93■□□□□ 0.3
PCDH9Q9HC56 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC16.93■□□□□ 0.3
PCDH9Q9HC56 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
PCDH9Q9HC56 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC16.93■□□□□ 0.3
PCDH9Q9HC56 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PCDH9Q9HC56 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms