Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC14.55□□□□□ -0.08
MMP28Q9H239 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
MMP28Q9H239 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC14.55□□□□□ -0.08
MMP28Q9H239 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
MMP28Q9H239 AC012313.10-201ENST00000623509 926 ntBASIC14.55□□□□□ -0.08
MMP28Q9H239 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
MMP28Q9H239 AC006486.2-201ENST00000624246 2199 ntBASIC14.55□□□□□ -0.08
MMP28Q9H239 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC14.55□□□□□ -0.08
MMP28Q9H239 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC14.55□□□□□ -0.08
MMP28Q9H239 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
MMP28Q9H239 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC14.55□□□□□ -0.08
MMP28Q9H239 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
MMP28Q9H239 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MMP28Q9H239 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
MMP28Q9H239 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
MMP28Q9H239 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC14.55□□□□□ -0.08
MMP28Q9H239 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MMP28Q9H239 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
MMP28Q9H239 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
MMP28Q9H239 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
MMP28Q9H239 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
MMP28Q9H239 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
MMP28Q9H239 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
MMP28Q9H239 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
MMP28Q9H239 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
MMP28Q9H239 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
MMP28Q9H239 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
MMP28Q9H239 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
MMP28Q9H239 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
MMP28Q9H239 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
MMP28Q9H239 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
MMP28Q9H239 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC14.54□□□□□ -0.08
MMP28Q9H239 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
MMP28Q9H239 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC14.54□□□□□ -0.08
MMP28Q9H239 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
MMP28Q9H239 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
MMP28Q9H239 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC14.54□□□□□ -0.08
MMP28Q9H239 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
MMP28Q9H239 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC14.54□□□□□ -0.08
MMP28Q9H239 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC14.54□□□□□ -0.08
MMP28Q9H239 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
MMP28Q9H239 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
MMP28Q9H239 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
MMP28Q9H239 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
MMP28Q9H239 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC14.54□□□□□ -0.08
MMP28Q9H239 VENTXP7-201ENST00000475503 772 ntBASIC14.54□□□□□ -0.08
MMP28Q9H239 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC14.54□□□□□ -0.08
MMP28Q9H239 AC011840.4-201ENST00000578471 627 ntBASIC14.54□□□□□ -0.08
MMP28Q9H239 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
MMP28Q9H239 AC016734.2-201ENST00000624325 1377 ntBASIC14.54□□□□□ -0.08
MMP28Q9H239 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
MMP28Q9H239 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
MMP28Q9H239 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC14.54□□□□□ -0.08
MMP28Q9H239 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
MMP28Q9H239 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
MMP28Q9H239 POLL-217ENST00000628479 1953 ntTSL 5 BASIC14.54□□□□□ -0.08
MMP28Q9H239 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC14.54□□□□□ -0.08
MMP28Q9H239 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
MMP28Q9H239 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC14.54□□□□□ -0.08
MMP28Q9H239 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
MMP28Q9H239 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
MMP28Q9H239 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
MMP28Q9H239 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
MMP28Q9H239 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
MMP28Q9H239 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
MMP28Q9H239 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
MMP28Q9H239 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
MMP28Q9H239 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
MMP28Q9H239 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
MMP28Q9H239 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC14.53□□□□□ -0.08
MMP28Q9H239 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
MMP28Q9H239 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
MMP28Q9H239 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
MMP28Q9H239 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC14.53□□□□□ -0.08
MMP28Q9H239 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
MMP28Q9H239 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
MMP28Q9H239 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
MMP28Q9H239 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
MMP28Q9H239 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC14.53□□□□□ -0.08
MMP28Q9H239 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
MMP28Q9H239 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
MMP28Q9H239 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
MMP28Q9H239 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
MMP28Q9H239 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
MMP28Q9H239 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
MMP28Q9H239 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
MMP28Q9H239 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
MMP28Q9H239 AC026396.1-201ENST00000419388 421 ntBASIC14.53□□□□□ -0.08
MMP28Q9H239 ATP5G2P1-201ENST00000433580 426 ntBASIC14.53□□□□□ -0.08
MMP28Q9H239 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC14.53□□□□□ -0.08
MMP28Q9H239 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
MMP28Q9H239 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC14.53□□□□□ -0.08
MMP28Q9H239 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC14.53□□□□□ -0.08
MMP28Q9H239 AC092119.3-201ENST00000612618 583 ntBASIC14.53□□□□□ -0.08
MMP28Q9H239 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC14.53□□□□□ -0.08
MMP28Q9H239 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC14.53□□□□□ -0.08
MMP28Q9H239 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
MMP28Q9H239 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
MMP28Q9H239 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
MMP28Q9H239 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms