Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
UPF3BQ9BZI7 PMS2P7-201ENST00000506558 1336 ntBASIC19.59■□□□□ 0.73
UPF3BQ9BZI7 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
UPF3BQ9BZI7 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
UPF3BQ9BZI7 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
UPF3BQ9BZI7 ATP6V0CP3-201ENST00000417255 467 ntBASIC19.59■□□□□ 0.73
UPF3BQ9BZI7 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC19.59■□□□□ 0.73
UPF3BQ9BZI7 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC19.59■□□□□ 0.73
UPF3BQ9BZI7 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC19.59■□□□□ 0.73
UPF3BQ9BZI7 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC19.59■□□□□ 0.73
UPF3BQ9BZI7 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
UPF3BQ9BZI7 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC19.59■□□□□ 0.73
UPF3BQ9BZI7 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
UPF3BQ9BZI7 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC19.59■□□□□ 0.73
UPF3BQ9BZI7 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
UPF3BQ9BZI7 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
UPF3BQ9BZI7 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC19.59■□□□□ 0.73
UPF3BQ9BZI7 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
UPF3BQ9BZI7 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
UPF3BQ9BZI7 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC19.59■□□□□ 0.73
UPF3BQ9BZI7 LTF-203ENST00000426532 2494 ntTSL 2 BASIC19.59■□□□□ 0.73
UPF3BQ9BZI7 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC19.59■□□□□ 0.73
UPF3BQ9BZI7 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
UPF3BQ9BZI7 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
UPF3BQ9BZI7 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
UPF3BQ9BZI7 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
UPF3BQ9BZI7 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
UPF3BQ9BZI7 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC19.58■□□□□ 0.73
UPF3BQ9BZI7 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC19.58■□□□□ 0.73
UPF3BQ9BZI7 CASK-202ENST00000378158 3848 ntTSL 5 BASIC19.58■□□□□ 0.73
UPF3BQ9BZI7 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
UPF3BQ9BZI7 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
UPF3BQ9BZI7 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
UPF3BQ9BZI7 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
UPF3BQ9BZI7 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
UPF3BQ9BZI7 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC19.58■□□□□ 0.73
UPF3BQ9BZI7 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC19.58■□□□□ 0.73
UPF3BQ9BZI7 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
UPF3BQ9BZI7 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
UPF3BQ9BZI7 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
UPF3BQ9BZI7 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.73
UPF3BQ9BZI7 CD99-202ENST00000381180 530 ntTSL 2 BASIC19.58■□□□□ 0.72
UPF3BQ9BZI7 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
UPF3BQ9BZI7 CRYGEP-201ENST00000412192 528 ntBASIC19.58■□□□□ 0.72
UPF3BQ9BZI7 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC19.58■□□□□ 0.72
UPF3BQ9BZI7 RPL28-209ENST00000560055 670 ntTSL 3 BASIC19.58■□□□□ 0.72
UPF3BQ9BZI7 AL031432.2-201ENST00000566714 459 ntBASIC19.58■□□□□ 0.72
UPF3BQ9BZI7 AL928711.1-201ENST00000570165 459 ntBASIC19.58■□□□□ 0.72
UPF3BQ9BZI7 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
UPF3BQ9BZI7 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC19.58■□□□□ 0.72
UPF3BQ9BZI7 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC19.58■□□□□ 0.72
UPF3BQ9BZI7 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC19.58■□□□□ 0.72
UPF3BQ9BZI7 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
UPF3BQ9BZI7 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
UPF3BQ9BZI7 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
UPF3BQ9BZI7 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
UPF3BQ9BZI7 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
UPF3BQ9BZI7 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
UPF3BQ9BZI7 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC19.58■□□□□ 0.72
UPF3BQ9BZI7 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
UPF3BQ9BZI7 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC19.58■□□□□ 0.72
UPF3BQ9BZI7 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
UPF3BQ9BZI7 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
UPF3BQ9BZI7 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
UPF3BQ9BZI7 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
UPF3BQ9BZI7 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC19.57■□□□□ 0.72
UPF3BQ9BZI7 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC19.57■□□□□ 0.72
UPF3BQ9BZI7 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
UPF3BQ9BZI7 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
UPF3BQ9BZI7 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
UPF3BQ9BZI7 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC19.57■□□□□ 0.72
UPF3BQ9BZI7 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
UPF3BQ9BZI7 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC19.57■□□□□ 0.72
UPF3BQ9BZI7 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
UPF3BQ9BZI7 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC19.57■□□□□ 0.72
UPF3BQ9BZI7 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
UPF3BQ9BZI7 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
UPF3BQ9BZI7 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
UPF3BQ9BZI7 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
UPF3BQ9BZI7 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
UPF3BQ9BZI7 METTL26-205ENST00000397666 726 ntTSL 2 BASIC19.57■□□□□ 0.72
UPF3BQ9BZI7 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC19.57■□□□□ 0.72
UPF3BQ9BZI7 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
UPF3BQ9BZI7 AC093909.1-201ENST00000504731 1122 ntBASIC19.57■□□□□ 0.72
UPF3BQ9BZI7 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC19.57■□□□□ 0.72
UPF3BQ9BZI7 CD63-204ENST00000546939 779 ntTSL 3 BASIC19.57■□□□□ 0.72
UPF3BQ9BZI7 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC19.57■□□□□ 0.72
UPF3BQ9BZI7 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC19.57■□□□□ 0.72
UPF3BQ9BZI7 AL645728.2-201ENST00000641974 660 ntBASIC19.57■□□□□ 0.72
UPF3BQ9BZI7 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC19.57■□□□□ 0.72
UPF3BQ9BZI7 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
UPF3BQ9BZI7 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC19.57■□□□□ 0.72
UPF3BQ9BZI7 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
UPF3BQ9BZI7 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC19.57■□□□□ 0.72
UPF3BQ9BZI7 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
UPF3BQ9BZI7 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
UPF3BQ9BZI7 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
UPF3BQ9BZI7 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
UPF3BQ9BZI7 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
UPF3BQ9BZI7 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms