Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC16.82■□□□□ 0.28
CDX2Q99626 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
CDX2Q99626 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CDX2Q99626 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
CDX2Q99626 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDX2Q99626 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDX2Q99626 AC133963.1-201ENST00000504166 1679 ntBASIC16.81■□□□□ 0.28
CDX2Q99626 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDX2Q99626 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDX2Q99626 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDX2Q99626 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDX2Q99626 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDX2Q99626 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC16.81■□□□□ 0.28
CDX2Q99626 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDX2Q99626 TUBB8P12-201ENST00000308911 1335 ntBASIC16.81■□□□□ 0.28
CDX2Q99626 TUBB7P-202ENST00000428444 1305 ntBASIC16.81■□□□□ 0.28
CDX2Q99626 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CDX2Q99626 TUBB8P7-204ENST00000567960 1332 ntBASIC16.81■□□□□ 0.28
CDX2Q99626 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
CDX2Q99626 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
CDX2Q99626 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
CDX2Q99626 AL596276.2-201ENST00000447525 331 ntBASIC16.81■□□□□ 0.28
CDX2Q99626 HSPB1P2-201ENST00000448722 546 ntBASIC16.81■□□□□ 0.28
CDX2Q99626 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC16.81■□□□□ 0.28
CDX2Q99626 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC16.81■□□□□ 0.28
CDX2Q99626 RN7SL774P-201ENST00000577467 290 ntBASIC16.81■□□□□ 0.28
CDX2Q99626 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC16.81■□□□□ 0.28
CDX2Q99626 DIO1-215ENST00000610607 796 ntTSL 5 BASIC16.81■□□□□ 0.28
CDX2Q99626 AC132938.4-201ENST00000623835 848 ntBASIC16.81■□□□□ 0.28
CDX2Q99626 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC16.81■□□□□ 0.28
CDX2Q99626 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC16.81■□□□□ 0.28
CDX2Q99626 REXO1L8P-201ENST00000604378 1897 ntBASIC16.81■□□□□ 0.28
CDX2Q99626 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDX2Q99626 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC16.81■□□□□ 0.28
CDX2Q99626 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDX2Q99626 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CDX2Q99626 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDX2Q99626 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC16.81■□□□□ 0.28
CDX2Q99626 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDX2Q99626 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CDX2Q99626 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDX2Q99626 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDX2Q99626 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDX2Q99626 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDX2Q99626 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CDX2Q99626 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDX2Q99626 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDX2Q99626 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC16.8■□□□□ 0.28
CDX2Q99626 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CDX2Q99626 TUBBP5-203ENST00000508529 1334 ntBASIC16.8■□□□□ 0.28
CDX2Q99626 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDX2Q99626 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC16.8■□□□□ 0.28
CDX2Q99626 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC16.8■□□□□ 0.28
CDX2Q99626 MSRA-203ENST00000441698 788 ntTSL 2 BASIC16.8■□□□□ 0.28
CDX2Q99626 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CDX2Q99626 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CDX2Q99626 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC16.8■□□□□ 0.28
CDX2Q99626 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC16.8■□□□□ 0.28
CDX2Q99626 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC16.8■□□□□ 0.28
CDX2Q99626 IFT20-206ENST00000578122 834 ntTSL 2 BASIC16.8■□□□□ 0.28
CDX2Q99626 IFT20-208ENST00000578985 831 ntTSL 3 BASIC16.8■□□□□ 0.28
CDX2Q99626 INO80C-210ENST00000590757 595 ntTSL 2 BASIC16.8■□□□□ 0.28
CDX2Q99626 AC073352.2-201ENST00000609385 439 ntBASIC16.8■□□□□ 0.28
CDX2Q99626 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CDX2Q99626 MIR6756-201ENST00000616240 63 ntBASIC16.8■□□□□ 0.28
CDX2Q99626 AC148477.9-201ENST00000623974 539 ntBASIC16.8■□□□□ 0.28
CDX2Q99626 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
CDX2Q99626 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC16.8■□□□□ 0.28
CDX2Q99626 AC006453.4-201ENST00000636949 1252 ntBASIC16.8■□□□□ 0.28
CDX2Q99626 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CDX2Q99626 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CDX2Q99626 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CDX2Q99626 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDX2Q99626 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDX2Q99626 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDX2Q99626 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDX2Q99626 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDX2Q99626 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CDX2Q99626 AC016396.2-201ENST00000562575 1417 ntBASIC16.79■□□□□ 0.28
CDX2Q99626 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CDX2Q99626 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDX2Q99626 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDX2Q99626 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDX2Q99626 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CDX2Q99626 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
CDX2Q99626 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC16.79■□□□□ 0.28
CDX2Q99626 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDX2Q99626 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDX2Q99626 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC16.79■□□□□ 0.28
CDX2Q99626 AZGP1P1-201ENST00000411909 902 ntBASIC16.79■□□□□ 0.28
CDX2Q99626 AL627389.1-201ENST00000413508 1182 ntBASIC16.79■□□□□ 0.28
CDX2Q99626 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC16.79■□□□□ 0.28
CDX2Q99626 TARDBPP1-201ENST00000442013 1203 ntBASIC16.79■□□□□ 0.28
CDX2Q99626 ELP6-209ENST00000446787 894 ntTSL 3 BASIC16.79■□□□□ 0.28
CDX2Q99626 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC16.79■□□□□ 0.28
CDX2Q99626 AL590640.2-201ENST00000457038 527 ntBASIC16.79■□□□□ 0.28
CDX2Q99626 NUP210P1-202ENST00000504322 710 ntBASIC16.79■□□□□ 0.28
CDX2Q99626 RNA5SP486-201ENST00000515961 83 ntBASIC16.79■□□□□ 0.28
CDX2Q99626 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC16.79■□□□□ 0.28
CDX2Q99626 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms