Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC17.74■□□□□ 0.43
CCDC42Q96M95 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC42Q96M95 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC42Q96M95 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC42Q96M95 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC42Q96M95 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC42Q96M95 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC17.73■□□□□ 0.43
CCDC42Q96M95 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC42Q96M95 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC42Q96M95 NID2-208ENST00000617139 3827 ntTSL 5 BASIC17.73■□□□□ 0.43
CCDC42Q96M95 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC42Q96M95 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC17.73■□□□□ 0.43
CCDC42Q96M95 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC42Q96M95 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC42Q96M95 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC42Q96M95 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC17.73■□□□□ 0.43
CCDC42Q96M95 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC42Q96M95 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC17.73■□□□□ 0.43
CCDC42Q96M95 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC42Q96M95 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC42Q96M95 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
CCDC42Q96M95 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC17.73■□□□□ 0.43
CCDC42Q96M95 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC17.73■□□□□ 0.43
CCDC42Q96M95 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC17.73■□□□□ 0.43
CCDC42Q96M95 AC021087.4-201ENST00000563761 564 ntBASIC17.73■□□□□ 0.43
CCDC42Q96M95 AC091304.2-201ENST00000564639 760 ntBASIC17.73■□□□□ 0.43
CCDC42Q96M95 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC17.73■□□□□ 0.43
CCDC42Q96M95 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC17.73■□□□□ 0.43
CCDC42Q96M95 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC17.73■□□□□ 0.43
CCDC42Q96M95 REXO1L6P-202ENST00000619970 1078 ntBASIC17.73■□□□□ 0.43
CCDC42Q96M95 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC42Q96M95 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
CCDC42Q96M95 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC17.73■□□□□ 0.43
CCDC42Q96M95 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC17.73■□□□□ 0.43
CCDC42Q96M95 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC42Q96M95 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC42Q96M95 FLJ16779-201ENST00000612722 7638 ntBASIC17.73■□□□□ 0.43
CCDC42Q96M95 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC17.73■□□□□ 0.43
CCDC42Q96M95 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC42Q96M95 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC42Q96M95 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
CCDC42Q96M95 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
CCDC42Q96M95 AL592424.1-201ENST00000563624 1536 ntBASIC17.72■□□□□ 0.43
CCDC42Q96M95 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
CCDC42Q96M95 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC17.72■□□□□ 0.43
CCDC42Q96M95 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC17.72■□□□□ 0.43
CCDC42Q96M95 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC17.72■□□□□ 0.43
CCDC42Q96M95 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC42Q96M95 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC42Q96M95 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC42Q96M95 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC42Q96M95 AC068587.6-202ENST00000641839 5619 ntBASIC17.72■□□□□ 0.43
CCDC42Q96M95 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC17.72■□□□□ 0.43
CCDC42Q96M95 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC42Q96M95 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC17.72■□□□□ 0.43
CCDC42Q96M95 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC42Q96M95 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC42Q96M95 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC42Q96M95 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC42Q96M95 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC42Q96M95 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC17.72■□□□□ 0.43
CCDC42Q96M95 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC17.72■□□□□ 0.43
CCDC42Q96M95 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC17.72■□□□□ 0.43
CCDC42Q96M95 IRF8-202ENST00000562492 946 ntTSL 3 BASIC17.72■□□□□ 0.43
CCDC42Q96M95 CYGB-205ENST00000590175 830 ntTSL 3 BASIC17.72■□□□□ 0.43
CCDC42Q96M95 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC17.72■□□□□ 0.43
CCDC42Q96M95 AC107918.4-202ENST00000641623 219 ntBASIC17.72■□□□□ 0.43
CCDC42Q96M95 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC42Q96M95 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC42Q96M95 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC17.72■□□□□ 0.43
CCDC42Q96M95 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC42Q96M95 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC42Q96M95 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC42Q96M95 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
CCDC42Q96M95 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC17.72■□□□□ 0.43
CCDC42Q96M95 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC42Q96M95 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC42Q96M95 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
CCDC42Q96M95 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC42Q96M95 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC42Q96M95 AC067930.6-201ENST00000623257 4947 ntBASIC17.72■□□□□ 0.43
CCDC42Q96M95 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC17.72■□□□□ 0.43
CCDC42Q96M95 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
CCDC42Q96M95 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC42Q96M95 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC42Q96M95 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC42Q96M95 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC42Q96M95 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC17.71■□□□□ 0.43
CCDC42Q96M95 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC42Q96M95 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC17.71■□□□□ 0.43
CCDC42Q96M95 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC42Q96M95 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC42Q96M95 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
CCDC42Q96M95 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC42Q96M95 ARMC10P1-201ENST00000313754 855 ntBASIC17.71■□□□□ 0.43
CCDC42Q96M95 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC42Q96M95 DPM2-202ENST00000373110 738 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC42Q96M95 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC42Q96M95 TSPY19P-201ENST00000418461 509 ntBASIC17.71■□□□□ 0.43
CCDC42Q96M95 TSPY18P-201ENST00000441642 509 ntBASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms