Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 AC013467.2-201ENST00000605472 835 ntBASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 AL773604.1-201ENST00000617417 272 ntBASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 AL355877.3-201ENST00000622820 899 ntBASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 VPS51-217ENST00000639871 243 ntTSL 5 BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 HLA-DQB2-231ENST00000435145 2026 ntBASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 ING5-213ENST00000636051 4199 ntTSL 5 BASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 MED16-201ENST00000269814 1199 ntTSL 5 BASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 NKTR-203ENST00000442970 646 ntTSL 2 BASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 AC009078.2-202ENST00000463353 338 ntBASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 AC106795.1-205ENST00000512851 1056 ntBASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 PAN3-AS1-201ENST00000563843 1351 ntBASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 GGT3P-204ENST00000453783 1664 ntBASIC15.35■□□□□ 0.05
DEPDC4Q8N2C3 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 KRT8P49-201ENST00000604166 1432 ntBASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 GGT4P-201ENST00000623672 1708 ntBASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 FES-204ENST00000414248 2327 ntTSL 2 BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 AC132938.5-201ENST00000624980 1813 ntBASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC15.34■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms