Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC15.03■□□□□ -0
MSX1P28360 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC15.03■□□□□ -0
MSX1P28360 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
MSX1P28360 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
MSX1P28360 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC15.03■□□□□ -0
MSX1P28360 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC15.03■□□□□ -0
MSX1P28360 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
MSX1P28360 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MSX1P28360 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC15.03■□□□□ -0
MSX1P28360 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MSX1P28360 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
MSX1P28360 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MSX1P28360 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MSX1P28360 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC15.03■□□□□ -0
MSX1P28360 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC15.03■□□□□ -0
MSX1P28360 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC15.03■□□□□ -0
MSX1P28360 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MSX1P28360 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC15.03■□□□□ -0
MSX1P28360 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC15.02■□□□□ -0
MSX1P28360 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC15.02■□□□□ -0
MSX1P28360 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC15.02■□□□□ -0
MSX1P28360 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02■□□□□ -0
MSX1P28360 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
MSX1P28360 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC15.02■□□□□ -0
MSX1P28360 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC15.02■□□□□ -0
MSX1P28360 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
MSX1P28360 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC15.02■□□□□ -0
MSX1P28360 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC15.02■□□□□ -0
MSX1P28360 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC15.02■□□□□ -0
MSX1P28360 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
MSX1P28360 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
MSX1P28360 BSG-215ENST00000618006 1329 ntTSL 2 BASIC15.02■□□□□ -0
MSX1P28360 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC15.02■□□□□ -0
MSX1P28360 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
MSX1P28360 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC15.02■□□□□ -0
MSX1P28360 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC15.02■□□□□ -0
MSX1P28360 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC15.02■□□□□ -0
MSX1P28360 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC15.02■□□□□ -0
MSX1P28360 AL627223.1-201ENST00000416693 442 ntBASIC15.02■□□□□ -0
MSX1P28360 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC15.02■□□□□ -0
MSX1P28360 TIMM8BP1-201ENST00000452384 211 ntBASIC15.02■□□□□ -0
MSX1P28360 AC067863.1-201ENST00000494933 530 ntBASIC15.02■□□□□ -0
MSX1P28360 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC15.02■□□□□ -0
MSX1P28360 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC15.02■□□□□ -0
MSX1P28360 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC15.02■□□□□ -0
MSX1P28360 AL135744.1-201ENST00000565098 629 ntBASIC15.02■□□□□ -0
MSX1P28360 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC15.02■□□□□ -0
MSX1P28360 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC15.02■□□□□ -0
MSX1P28360 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC15.02■□□□□ -0
MSX1P28360 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC15.02■□□□□ -0
MSX1P28360 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC15.02■□□□□ -0
MSX1P28360 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC15.02■□□□□ -0
MSX1P28360 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
MSX1P28360 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
MSX1P28360 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
MSX1P28360 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
MSX1P28360 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC15.02□□□□□ -0.01
MSX1P28360 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
MSX1P28360 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
MSX1P28360 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
MSX1P28360 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
MSX1P28360 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC15.02□□□□□ -0.01
MSX1P28360 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSX1P28360 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC15.01□□□□□ -0.01
MSX1P28360 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC15.01□□□□□ -0.01
MSX1P28360 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
MSX1P28360 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
MSX1P28360 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSX1P28360 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSX1P28360 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSX1P28360 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSX1P28360 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC15.01□□□□□ -0.01
MSX1P28360 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC15.01□□□□□ -0.01
MSX1P28360 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSX1P28360 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSX1P28360 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
MSX1P28360 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC15.01□□□□□ -0.01
MSX1P28360 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC15.01□□□□□ -0.01
MSX1P28360 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
MSX1P28360 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSX1P28360 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC15.01□□□□□ -0.01
MSX1P28360 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC15.01□□□□□ -0.01
MSX1P28360 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC15.01□□□□□ -0.01
MSX1P28360 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
MSX1P28360 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC15.01□□□□□ -0.01
MSX1P28360 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC15.01□□□□□ -0.01
MSX1P28360 KRT8P23-201ENST00000560090 1207 ntBASIC15.01□□□□□ -0.01
MSX1P28360 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC15.01□□□□□ -0.01
MSX1P28360 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
MSX1P28360 AC008267.7-201ENST00000624570 1194 ntBASIC15.01□□□□□ -0.01
MSX1P28360 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC15.01□□□□□ -0.01
MSX1P28360 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
MSX1P28360 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSX1P28360 PCDHA14-201ENST00000506751 2298 ntBASIC15.01□□□□□ -0.01
MSX1P28360 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSX1P28360 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSX1P28360 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSX1P28360 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC15.01□□□□□ -0.01
MSX1P28360 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
MSX1P28360 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms