Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC20.22■□□□□ 0.83
COL5A3P25940 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL5A3P25940 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL5A3P25940 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC20.22■□□□□ 0.83
COL5A3P25940 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC20.22■□□□□ 0.83
COL5A3P25940 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL5A3P25940 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL5A3P25940 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC20.22■□□□□ 0.83
COL5A3P25940 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
COL5A3P25940 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL5A3P25940 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
COL5A3P25940 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
COL5A3P25940 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL5A3P25940 AMT-233ENST00000636522 1620 ntTSL 2 BASIC20.22■□□□□ 0.83
COL5A3P25940 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL5A3P25940 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL5A3P25940 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL5A3P25940 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL5A3P25940 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL5A3P25940 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL5A3P25940 TPI1-206ENST00000488464 791 ntTSL 5 BASIC20.22■□□□□ 0.83
COL5A3P25940 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC20.22■□□□□ 0.83
COL5A3P25940 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC20.22■□□□□ 0.83
COL5A3P25940 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
COL5A3P25940 HADH-212ENST00000638621 741 ntTSL 5 BASIC20.22■□□□□ 0.83
COL5A3P25940 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL5A3P25940 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL5A3P25940 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC20.21■□□□□ 0.83
COL5A3P25940 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL5A3P25940 USE1-206ENST00000595101 1776 ntTSL 2 BASIC20.21■□□□□ 0.83
COL5A3P25940 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL5A3P25940 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL5A3P25940 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL5A3P25940 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL5A3P25940 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL5A3P25940 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL5A3P25940 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC20.21■□□□□ 0.83
COL5A3P25940 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC20.21■□□□□ 0.83
COL5A3P25940 AC097359.3-201ENST00000603982 1210 ntBASIC20.21■□□□□ 0.83
COL5A3P25940 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC20.21■□□□□ 0.83
COL5A3P25940 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
COL5A3P25940 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL5A3P25940 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
COL5A3P25940 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC20.2■□□□□ 0.83
COL5A3P25940 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC20.2■□□□□ 0.83
COL5A3P25940 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC20.2■□□□□ 0.82
COL5A3P25940 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL5A3P25940 TP73-209ENST00000603362 1668 ntTSL 5 BASIC20.2■□□□□ 0.82
COL5A3P25940 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL5A3P25940 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL5A3P25940 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL5A3P25940 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL5A3P25940 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL5A3P25940 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL5A3P25940 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL5A3P25940 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL5A3P25940 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL5A3P25940 NME6-203ENST00000415644 849 ntTSL 2 BASIC20.2■□□□□ 0.82
COL5A3P25940 GPAA1P2-201ENST00000417923 928 ntBASIC20.2■□□□□ 0.82
COL5A3P25940 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC20.2■□□□□ 0.82
COL5A3P25940 PFN1P12-201ENST00000455938 534 ntBASIC20.2■□□□□ 0.82
COL5A3P25940 AC093433.1-201ENST00000458048 571 ntBASIC20.2■□□□□ 0.82
COL5A3P25940 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC20.2■□□□□ 0.82
COL5A3P25940 AC015910.1-201ENST00000579400 975 ntBASIC20.2■□□□□ 0.82
COL5A3P25940 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC20.2■□□□□ 0.82
COL5A3P25940 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC20.2■□□□□ 0.82
COL5A3P25940 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL5A3P25940 AC005695.3-201ENST00000614522 232 ntBASIC20.2■□□□□ 0.82
COL5A3P25940 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC20.2■□□□□ 0.82
COL5A3P25940 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL5A3P25940 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL5A3P25940 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL5A3P25940 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL5A3P25940 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL5A3P25940 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
COL5A3P25940 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL5A3P25940 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL5A3P25940 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL5A3P25940 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC20.2■□□□□ 0.82
COL5A3P25940 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL5A3P25940 AP001282.1-201ENST00000531301 1499 ntBASIC20.2■□□□□ 0.82
COL5A3P25940 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
COL5A3P25940 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
COL5A3P25940 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL5A3P25940 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC20.19■□□□□ 0.82
COL5A3P25940 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC20.19■□□□□ 0.82
COL5A3P25940 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC20.19■□□□□ 0.82
COL5A3P25940 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC20.19■□□□□ 0.82
COL5A3P25940 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC20.19■□□□□ 0.82
COL5A3P25940 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL5A3P25940 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL5A3P25940 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL5A3P25940 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL5A3P25940 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
COL5A3P25940 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL5A3P25940 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL5A3P25940 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
COL5A3P25940 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC20.19■□□□□ 0.82
COL5A3P25940 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL5A3P25940 HARS-202ENST00000415192 1401 ntTSL 2 BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms