Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
USF1P22415 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC13.93□□□□□ -0.18
USF1P22415 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
USF1P22415 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
USF1P22415 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC13.93□□□□□ -0.18
USF1P22415 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC13.93□□□□□ -0.18
USF1P22415 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
USF1P22415 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
USF1P22415 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
USF1P22415 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
USF1P22415 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC13.93□□□□□ -0.18
USF1P22415 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
USF1P22415 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC13.93□□□□□ -0.18
USF1P22415 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
USF1P22415 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
USF1P22415 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
USF1P22415 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
USF1P22415 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
USF1P22415 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC13.92□□□□□ -0.18
USF1P22415 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
USF1P22415 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
USF1P22415 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
USF1P22415 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC13.92□□□□□ -0.18
USF1P22415 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
USF1P22415 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
USF1P22415 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC13.92□□□□□ -0.18
USF1P22415 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
USF1P22415 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
USF1P22415 AC060834.1-201ENST00000443027 2032 ntBASIC13.92□□□□□ -0.18
USF1P22415 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
USF1P22415 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
USF1P22415 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
USF1P22415 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
USF1P22415 COPE-202ENST00000349893 948 ntTSL 2 BASIC13.92□□□□□ -0.18
USF1P22415 METTL26-204ENST00000397665 558 ntTSL 2 BASIC13.92□□□□□ -0.18
USF1P22415 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC13.92□□□□□ -0.18
USF1P22415 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC13.92□□□□□ -0.18
USF1P22415 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC13.92□□□□□ -0.18
USF1P22415 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC13.92□□□□□ -0.18
USF1P22415 PPP6R2P1-201ENST00000450880 1275 ntBASIC13.92□□□□□ -0.18
USF1P22415 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC13.92□□□□□ -0.18
USF1P22415 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC13.92□□□□□ -0.18
USF1P22415 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC13.92□□□□□ -0.18
USF1P22415 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC13.92□□□□□ -0.18
USF1P22415 LINC02560-201ENST00000596379 459 ntBASIC13.92□□□□□ -0.18
USF1P22415 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC13.92□□□□□ -0.18
USF1P22415 AC021097.1-201ENST00000607902 574 ntBASIC13.92□□□□□ -0.18
USF1P22415 AL035252.4-201ENST00000624174 288 ntBASIC13.92□□□□□ -0.18
USF1P22415 AC008761.3-201ENST00000624803 892 ntBASIC13.92□□□□□ -0.18
USF1P22415 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC13.92□□□□□ -0.18
USF1P22415 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
USF1P22415 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
USF1P22415 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
USF1P22415 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
USF1P22415 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
USF1P22415 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC13.92□□□□□ -0.18
USF1P22415 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
USF1P22415 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
USF1P22415 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
USF1P22415 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
USF1P22415 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
USF1P22415 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
USF1P22415 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
USF1P22415 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
USF1P22415 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
USF1P22415 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
USF1P22415 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
USF1P22415 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
USF1P22415 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
USF1P22415 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
USF1P22415 LTF-203ENST00000426532 2494 ntTSL 2 BASIC13.91□□□□□ -0.18
USF1P22415 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
USF1P22415 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC13.91□□□□□ -0.18
USF1P22415 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
USF1P22415 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
USF1P22415 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
USF1P22415 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
USF1P22415 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC13.91□□□□□ -0.18
USF1P22415 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
USF1P22415 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
USF1P22415 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
USF1P22415 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
USF1P22415 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
USF1P22415 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC13.91□□□□□ -0.18
USF1P22415 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
USF1P22415 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
USF1P22415 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
USF1P22415 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
USF1P22415 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
USF1P22415 RAC2-204ENST00000406508 893 ntTSL 5 BASIC13.91□□□□□ -0.18
USF1P22415 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC13.91□□□□□ -0.18
USF1P22415 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC13.91□□□□□ -0.18
USF1P22415 UGT1A2P-201ENST00000454886 866 ntBASIC13.91□□□□□ -0.18
USF1P22415 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC13.91□□□□□ -0.18
USF1P22415 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
USF1P22415 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC13.91□□□□□ -0.18
USF1P22415 AC124947.2-201ENST00000547118 1133 ntBASIC13.91□□□□□ -0.18
USF1P22415 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
USF1P22415 MIR4453-201ENST00000584019 89 ntBASIC13.91□□□□□ -0.18
USF1P22415 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms