Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC16.72■□□□□ 0.27
COL9A1P20849 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL9A1P20849 AC067852.2-201ENST00000590513 2313 ntBASIC16.72■□□□□ 0.27
COL9A1P20849 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC16.72■□□□□ 0.27
COL9A1P20849 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
COL9A1P20849 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC16.72■□□□□ 0.27
COL9A1P20849 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC16.72■□□□□ 0.27
COL9A1P20849 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC16.72■□□□□ 0.27
COL9A1P20849 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC16.72■□□□□ 0.27
COL9A1P20849 KATNBL1P2-201ENST00000433311 835 ntBASIC16.72■□□□□ 0.27
COL9A1P20849 HIST2H2BC-201ENST00000498492 580 ntBASIC16.72■□□□□ 0.27
COL9A1P20849 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC16.72■□□□□ 0.27
COL9A1P20849 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC16.72■□□□□ 0.27
COL9A1P20849 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC16.72■□□□□ 0.27
COL9A1P20849 AP000812.2-201ENST00000538934 718 ntBASIC16.72■□□□□ 0.27
COL9A1P20849 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC16.72■□□□□ 0.27
COL9A1P20849 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC16.72■□□□□ 0.27
COL9A1P20849 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC16.72■□□□□ 0.27
COL9A1P20849 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC16.72■□□□□ 0.27
COL9A1P20849 AC020914.3-201ENST00000594712 304 ntBASIC16.72■□□□□ 0.27
COL9A1P20849 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.72■□□□□ 0.27
COL9A1P20849 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL9A1P20849 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC16.72■□□□□ 0.27
COL9A1P20849 AC007386.2-202ENST00000622718 1018 ntTSL 3 BASIC16.72■□□□□ 0.27
COL9A1P20849 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC16.72■□□□□ 0.27
COL9A1P20849 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL9A1P20849 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
COL9A1P20849 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL9A1P20849 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
COL9A1P20849 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL9A1P20849 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL9A1P20849 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL9A1P20849 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC16.72■□□□□ 0.27
COL9A1P20849 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
COL9A1P20849 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL9A1P20849 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL9A1P20849 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL9A1P20849 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
COL9A1P20849 GRN-222ENST00000639447 1314 ntTSL 2 BASIC16.71■□□□□ 0.27
COL9A1P20849 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL9A1P20849 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC16.71■□□□□ 0.27
COL9A1P20849 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL9A1P20849 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL9A1P20849 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL9A1P20849 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
COL9A1P20849 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL9A1P20849 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL9A1P20849 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
COL9A1P20849 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL9A1P20849 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC16.71■□□□□ 0.27
COL9A1P20849 FAM86HP-204ENST00000513466 959 ntBASIC16.71■□□□□ 0.27
COL9A1P20849 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC16.71■□□□□ 0.27
COL9A1P20849 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC16.71■□□□□ 0.27
COL9A1P20849 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
COL9A1P20849 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL9A1P20849 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC16.71■□□□□ 0.27
COL9A1P20849 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC16.71■□□□□ 0.27
COL9A1P20849 RN7SL555P-201ENST00000584742 339 ntBASIC16.71■□□□□ 0.27
COL9A1P20849 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC16.71■□□□□ 0.27
COL9A1P20849 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC16.71■□□□□ 0.27
COL9A1P20849 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.71■□□□□ 0.27
COL9A1P20849 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC16.71■□□□□ 0.27
COL9A1P20849 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL9A1P20849 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
COL9A1P20849 CLK3P2-201ENST00000427566 1453 ntBASIC16.71■□□□□ 0.27
COL9A1P20849 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
COL9A1P20849 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL9A1P20849 AC073439.1-201ENST00000624121 1774 ntBASIC16.71■□□□□ 0.27
COL9A1P20849 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
COL9A1P20849 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL9A1P20849 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL9A1P20849 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
COL9A1P20849 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.26
COL9A1P20849 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.26
COL9A1P20849 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC16.7■□□□□ 0.26
COL9A1P20849 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
COL9A1P20849 AC006277.1-201ENST00000624348 1610 ntBASIC16.7■□□□□ 0.26
COL9A1P20849 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL9A1P20849 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
COL9A1P20849 AC092068.3-201ENST00000587894 2016 ntBASIC16.7■□□□□ 0.26
COL9A1P20849 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL9A1P20849 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL9A1P20849 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
COL9A1P20849 SNX33P1-201ENST00000592116 1762 ntBASIC16.7■□□□□ 0.26
COL9A1P20849 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL9A1P20849 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC16.7■□□□□ 0.26
COL9A1P20849 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.7■□□□□ 0.26
COL9A1P20849 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC16.7■□□□□ 0.26
COL9A1P20849 ZBTB12BP-201ENST00000314232 1122 ntBASIC16.7■□□□□ 0.26
COL9A1P20849 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC16.7■□□□□ 0.26
COL9A1P20849 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
COL9A1P20849 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC16.7■□□□□ 0.26
COL9A1P20849 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC16.7■□□□□ 0.26
COL9A1P20849 BX284668.4-201ENST00000453917 508 ntBASIC16.7■□□□□ 0.26
COL9A1P20849 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC16.7■□□□□ 0.26
COL9A1P20849 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC16.7■□□□□ 0.26
COL9A1P20849 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC16.7■□□□□ 0.26
COL9A1P20849 AC079316.1-201ENST00000548397 411 ntBASIC16.7■□□□□ 0.26
COL9A1P20849 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC16.7■□□□□ 0.26
COL9A1P20849 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms