Protein–RNA interactions for Protein: P19838

NFKB1, Nuclear factor NF-kappa-B p105 subunit, humanhuman

Predictions only

Length 968 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NFKB1P19838 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
NFKB1P19838 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
NFKB1P19838 AP000347.1-202ENST00000435868 847 ntBASIC16.68■□□□□ 0.26
NFKB1P19838 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC16.68■□□□□ 0.26
NFKB1P19838 QPRT-203ENST00000562473 579 ntTSL 3 BASIC16.68■□□□□ 0.26
NFKB1P19838 AC040169.1-201ENST00000565382 521 ntBASIC16.68■□□□□ 0.26
NFKB1P19838 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
NFKB1P19838 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
NFKB1P19838 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
NFKB1P19838 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
NFKB1P19838 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
NFKB1P19838 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC16.68■□□□□ 0.26
NFKB1P19838 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.68■□□□□ 0.26
NFKB1P19838 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC16.68■□□□□ 0.26
NFKB1P19838 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.68■□□□□ 0.26
NFKB1P19838 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
NFKB1P19838 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
NFKB1P19838 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
NFKB1P19838 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
NFKB1P19838 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
NFKB1P19838 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.68■□□□□ 0.26
NFKB1P19838 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.68■□□□□ 0.26
NFKB1P19838 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC16.68■□□□□ 0.26
NFKB1P19838 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
NFKB1P19838 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC16.68■□□□□ 0.26
NFKB1P19838 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
NFKB1P19838 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
NFKB1P19838 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NFKB1P19838 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
NFKB1P19838 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NFKB1P19838 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
NFKB1P19838 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
NFKB1P19838 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NFKB1P19838 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
NFKB1P19838 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
NFKB1P19838 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
NFKB1P19838 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
NFKB1P19838 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
NFKB1P19838 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
NFKB1P19838 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC16.67■□□□□ 0.26
NFKB1P19838 NARF-206ENST00000457415 1668 ntTSL 5 BASIC16.67■□□□□ 0.26
NFKB1P19838 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
NFKB1P19838 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
NFKB1P19838 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
NFKB1P19838 FAM58CP-201ENST00000435741 640 ntBASIC16.67■□□□□ 0.26
NFKB1P19838 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
NFKB1P19838 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC16.67■□□□□ 0.26
NFKB1P19838 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC16.67■□□□□ 0.26
NFKB1P19838 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC16.67■□□□□ 0.26
NFKB1P19838 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
NFKB1P19838 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
NFKB1P19838 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC16.67■□□□□ 0.26
NFKB1P19838 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
NFKB1P19838 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
NFKB1P19838 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.67■□□□□ 0.26
NFKB1P19838 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NFKB1P19838 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC16.67■□□□□ 0.26
NFKB1P19838 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
NFKB1P19838 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
NFKB1P19838 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
NFKB1P19838 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
NFKB1P19838 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
NFKB1P19838 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
NFKB1P19838 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.67■□□□□ 0.26
NFKB1P19838 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
NFKB1P19838 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
NFKB1P19838 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
NFKB1P19838 AC008894.3-201ENST00000624324 3103 ntBASIC16.66■□□□□ 0.26
NFKB1P19838 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NFKB1P19838 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC16.66■□□□□ 0.26
NFKB1P19838 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NFKB1P19838 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
NFKB1P19838 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
NFKB1P19838 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
NFKB1P19838 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
NFKB1P19838 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
NFKB1P19838 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC16.66■□□□□ 0.26
NFKB1P19838 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC16.66■□□□□ 0.26
NFKB1P19838 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
NFKB1P19838 IMP4-203ENST00000409935 958 ntTSL 5 BASIC16.66■□□□□ 0.26
NFKB1P19838 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC16.66■□□□□ 0.26
NFKB1P19838 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC16.66■□□□□ 0.26
NFKB1P19838 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
NFKB1P19838 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC16.66■□□□□ 0.26
NFKB1P19838 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC16.66■□□□□ 0.26
NFKB1P19838 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
NFKB1P19838 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC16.66■□□□□ 0.26
NFKB1P19838 RARRES2P8-201ENST00000566335 367 ntBASIC16.66■□□□□ 0.26
NFKB1P19838 AC002347.1-201ENST00000569543 541 ntBASIC16.66■□□□□ 0.26
NFKB1P19838 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC16.66■□□□□ 0.26
NFKB1P19838 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.66■□□□□ 0.26
NFKB1P19838 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
NFKB1P19838 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
NFKB1P19838 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
NFKB1P19838 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NFKB1P19838 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC16.66■□□□□ 0.26
NFKB1P19838 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
NFKB1P19838 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
NFKB1P19838 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NFKB1P19838 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms