Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 TFAMP1-201ENST00000412727 736 ntBASIC19.32■□□□□ 0.68
HMGB1P09429 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC19.32■□□□□ 0.68
HMGB1P09429 AC105233.2-201ENST00000523697 349 ntBASIC19.32■□□□□ 0.68
HMGB1P09429 AF228730.5-201ENST00000530288 346 ntBASIC19.32■□□□□ 0.68
HMGB1P09429 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC19.32■□□□□ 0.68
HMGB1P09429 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC19.32■□□□□ 0.68
HMGB1P09429 CITED2-204ENST00000618718 901 ntTSL 2 BASIC19.32■□□□□ 0.68
HMGB1P09429 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
HMGB1P09429 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB1P09429 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB1P09429 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC19.32■□□□□ 0.68
HMGB1P09429 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
HMGB1P09429 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB1P09429 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC19.32■□□□□ 0.68
HMGB1P09429 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB1P09429 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC19.32■□□□□ 0.68
HMGB1P09429 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB1P09429 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC19.32■□□□□ 0.68
HMGB1P09429 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB1P09429 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB1P09429 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB1P09429 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
HMGB1P09429 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB1P09429 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB1P09429 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB1P09429 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB1P09429 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB1P09429 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB1P09429 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC19.31■□□□□ 0.68
HMGB1P09429 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB1P09429 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB1P09429 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC19.31■□□□□ 0.68
HMGB1P09429 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC19.31■□□□□ 0.68
HMGB1P09429 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB1P09429 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB1P09429 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB1P09429 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC19.31■□□□□ 0.68
HMGB1P09429 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB1P09429 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC19.31■□□□□ 0.68
HMGB1P09429 FABP5-202ENST00000396359 986 ntTSL 5 BASIC19.31■□□□□ 0.68
HMGB1P09429 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC19.31■□□□□ 0.68
HMGB1P09429 MKNK2P1-201ENST00000437526 628 ntBASIC19.31■□□□□ 0.68
HMGB1P09429 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC19.31■□□□□ 0.68
HMGB1P09429 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC19.31■□□□□ 0.68
HMGB1P09429 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC19.31■□□□□ 0.68
HMGB1P09429 AL135744.1-201ENST00000565098 629 ntBASIC19.31■□□□□ 0.68
HMGB1P09429 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC19.31■□□□□ 0.68
HMGB1P09429 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC19.31■□□□□ 0.68
HMGB1P09429 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC19.31■□□□□ 0.68
HMGB1P09429 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC19.31■□□□□ 0.68
HMGB1P09429 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC19.31■□□□□ 0.68
HMGB1P09429 AC008267.7-201ENST00000624570 1194 ntBASIC19.31■□□□□ 0.68
HMGB1P09429 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
HMGB1P09429 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB1P09429 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB1P09429 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB1P09429 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB1P09429 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC19.31■□□□□ 0.68
HMGB1P09429 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC19.31■□□□□ 0.68
HMGB1P09429 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB1P09429 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC19.31■□□□□ 0.68
HMGB1P09429 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB1P09429 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC19.31■□□□□ 0.68
HMGB1P09429 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC19.31■□□□□ 0.68
HMGB1P09429 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
HMGB1P09429 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC19.3■□□□□ 0.68
HMGB1P09429 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC19.3■□□□□ 0.68
HMGB1P09429 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
HMGB1P09429 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HMGB1P09429 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC19.3■□□□□ 0.68
HMGB1P09429 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC19.3■□□□□ 0.68
HMGB1P09429 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HMGB1P09429 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC19.3■□□□□ 0.68
HMGB1P09429 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGB1P09429 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
HMGB1P09429 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGB1P09429 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC19.3■□□□□ 0.68
HMGB1P09429 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC19.3■□□□□ 0.68
HMGB1P09429 ADH5P3-201ENST00000433842 1137 ntBASIC19.3■□□□□ 0.68
HMGB1P09429 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
HMGB1P09429 AC098859.1-201ENST00000502915 1238 ntBASIC19.3■□□□□ 0.68
HMGB1P09429 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC19.3■□□□□ 0.68
HMGB1P09429 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC19.3■□□□□ 0.68
HMGB1P09429 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC19.3■□□□□ 0.68
HMGB1P09429 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
HMGB1P09429 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGB1P09429 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
HMGB1P09429 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGB1P09429 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGB1P09429 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HMGB1P09429 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGB1P09429 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGB1P09429 F11R-206ENST00000621309 4770 ntTSL 5 BASIC19.29■□□□□ 0.68
HMGB1P09429 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HMGB1P09429 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGB1P09429 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC19.29■□□□□ 0.68
HMGB1P09429 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGB1P09429 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC19.29■□□□□ 0.68
HMGB1P09429 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGB1P09429 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms