Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CXCL1P09341 KRT17P2-201ENST00000300992 1314 ntBASIC12.77□□□□□ -0.37
CXCL1P09341 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CXCL1P09341 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CXCL1P09341 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CXCL1P09341 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC12.77□□□□□ -0.37
CXCL1P09341 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CXCL1P09341 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC12.77□□□□□ -0.37
CXCL1P09341 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC12.77□□□□□ -0.37
CXCL1P09341 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC12.77□□□□□ -0.37
CXCL1P09341 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC12.77□□□□□ -0.37
CXCL1P09341 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CXCL1P09341 TBC1D3P5-201ENST00000579401 1545 ntBASIC12.77□□□□□ -0.37
CXCL1P09341 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC12.77□□□□□ -0.37
CXCL1P09341 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CXCL1P09341 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CXCL1P09341 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
CXCL1P09341 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC12.77□□□□□ -0.37
CXCL1P09341 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC12.77□□□□□ -0.37
CXCL1P09341 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CXCL1P09341 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CXCL1P09341 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CXCL1P09341 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CXCL1P09341 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CXCL1P09341 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CXCL1P09341 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CXCL1P09341 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
CXCL1P09341 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
CXCL1P09341 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CXCL1P09341 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC12.76□□□□□ -0.37
CXCL1P09341 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC12.76□□□□□ -0.37
CXCL1P09341 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC12.76□□□□□ -0.37
CXCL1P09341 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC12.76□□□□□ -0.37
CXCL1P09341 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
CXCL1P09341 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CXCL1P09341 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CXCL1P09341 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CXCL1P09341 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CXCL1P09341 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CXCL1P09341 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC12.76□□□□□ -0.37
CXCL1P09341 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC12.76□□□□□ -0.37
CXCL1P09341 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CXCL1P09341 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CXCL1P09341 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC12.76□□□□□ -0.37
CXCL1P09341 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CXCL1P09341 MARS-233ENST00000628866 2583 ntTSL 5 BASIC12.76□□□□□ -0.37
CXCL1P09341 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CXCL1P09341 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
CXCL1P09341 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC12.76□□□□□ -0.37
CXCL1P09341 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
CXCL1P09341 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC12.76□□□□□ -0.37
CXCL1P09341 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CXCL1P09341 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CXCL1P09341 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CXCL1P09341 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
CXCL1P09341 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CXCL1P09341 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC12.76□□□□□ -0.37
CXCL1P09341 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CXCL1P09341 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC12.76□□□□□ -0.37
CXCL1P09341 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CXCL1P09341 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
CXCL1P09341 AC069224.1-201ENST00000566372 1715 ntBASIC12.76□□□□□ -0.37
CXCL1P09341 AP003680.1-201ENST00000598970 3660 ntBASIC12.76□□□□□ -0.37
CXCL1P09341 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CXCL1P09341 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CXCL1P09341 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CXCL1P09341 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CXCL1P09341 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CXCL1P09341 API5-202ENST00000420461 2009 ntTSL 2 BASIC12.76□□□□□ -0.37
CXCL1P09341 OS9-204ENST00000389146 2091 ntTSL 2 BASIC12.76□□□□□ -0.37
CXCL1P09341 REXO1L2P-201ENST00000425429 2069 ntBASIC12.76□□□□□ -0.37
CXCL1P09341 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CXCL1P09341 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
CXCL1P09341 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CXCL1P09341 FLJ16779-201ENST00000612722 7638 ntBASIC12.76□□□□□ -0.37
CXCL1P09341 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CXCL1P09341 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC12.75□□□□□ -0.37
CXCL1P09341 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
CXCL1P09341 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
CXCL1P09341 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CXCL1P09341 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CXCL1P09341 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CXCL1P09341 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CXCL1P09341 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CXCL1P09341 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CXCL1P09341 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CXCL1P09341 BAALC-201ENST00000297574 801 ntTSL 3 BASIC12.75□□□□□ -0.37
CXCL1P09341 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CXCL1P09341 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
CXCL1P09341 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CXCL1P09341 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CXCL1P09341 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC12.75□□□□□ -0.37
CXCL1P09341 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CXCL1P09341 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CXCL1P09341 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CXCL1P09341 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CXCL1P09341 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC12.75□□□□□ -0.37
CXCL1P09341 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
CXCL1P09341 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CXCL1P09341 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms