Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL3A1P02461 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL3A1P02461 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC21.36■■□□□ 1.01
COL3A1P02461 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL3A1P02461 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL3A1P02461 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC21.36■■□□□ 1.01
COL3A1P02461 RPL13P2-201ENST00000440687 659 ntBASIC21.36■■□□□ 1.01
COL3A1P02461 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC21.36■■□□□ 1.01
COL3A1P02461 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL3A1P02461 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC21.36■■□□□ 1.01
COL3A1P02461 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC21.36■■□□□ 1.01
COL3A1P02461 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
COL3A1P02461 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
COL3A1P02461 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
COL3A1P02461 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC21.36■■□□□ 1.01
COL3A1P02461 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL3A1P02461 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL3A1P02461 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC21.36■■□□□ 1.01
COL3A1P02461 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.36■■□□□ 1.01
COL3A1P02461 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
COL3A1P02461 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL3A1P02461 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL3A1P02461 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
COL3A1P02461 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC21.35■■□□□ 1.01
COL3A1P02461 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC21.35■■□□□ 1.01
COL3A1P02461 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
COL3A1P02461 PCDHB19P-201ENST00000570871 2371 ntBASIC21.35■■□□□ 1.01
COL3A1P02461 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC21.35■■□□□ 1.01
COL3A1P02461 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC21.35■■□□□ 1.01
COL3A1P02461 TARDBPP1-201ENST00000442013 1203 ntBASIC21.35■■□□□ 1.01
COL3A1P02461 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC21.35■■□□□ 1.01
COL3A1P02461 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL3A1P02461 FXR1-221ENST00000491674 365 ntTSL 2 BASIC21.35■■□□□ 1.01
COL3A1P02461 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC21.35■■□□□ 1.01
COL3A1P02461 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC21.35■■□□□ 1.01
COL3A1P02461 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL3A1P02461 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
COL3A1P02461 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC21.35■■□□□ 1.01
COL3A1P02461 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL3A1P02461 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
COL3A1P02461 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL3A1P02461 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC21.35■■□□□ 1.01
COL3A1P02461 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL3A1P02461 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL3A1P02461 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL3A1P02461 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL3A1P02461 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC21.34■■□□□ 1.01
COL3A1P02461 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
COL3A1P02461 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL3A1P02461 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
COL3A1P02461 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL3A1P02461 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
COL3A1P02461 AL512638.1-201ENST00000457493 794 ntBASIC21.34■■□□□ 1.01
COL3A1P02461 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC21.34■■□□□ 1.01
COL3A1P02461 SRD5A3P1-201ENST00000603021 949 ntBASIC21.34■■□□□ 1.01
COL3A1P02461 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC21.34■■□□□ 1.01
COL3A1P02461 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC21.34■■□□□ 1.01
COL3A1P02461 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL3A1P02461 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC21.34■■□□□ 1.01
COL3A1P02461 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL3A1P02461 BLK-205ENST00000529894 2017 ntTSL 5 BASIC21.34■■□□□ 1.01
COL3A1P02461 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC21.34■■□□□ 1.01
COL3A1P02461 REXO1L1P-202ENST00000608646 1974 ntBASIC21.34■■□□□ 1.01
COL3A1P02461 WT1-209ENST00000530998 2421 ntTSL 2 BASIC21.34■■□□□ 1.01
COL3A1P02461 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL3A1P02461 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL3A1P02461 AC099398.1-201ENST00000567919 2776 ntBASIC21.34■■□□□ 1.01
COL3A1P02461 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC21.34■■□□□ 1.01
COL3A1P02461 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL3A1P02461 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL3A1P02461 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC21.34■■□□□ 1.01
COL3A1P02461 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC21.33■■□□□ 1.01
COL3A1P02461 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
COL3A1P02461 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC21.33■■□□□ 1.01
COL3A1P02461 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
COL3A1P02461 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
COL3A1P02461 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
COL3A1P02461 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
COL3A1P02461 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
COL3A1P02461 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
COL3A1P02461 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC21.33■■□□□ 1.01
COL3A1P02461 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC21.33■■□□□ 1.01
COL3A1P02461 MIR6069-201ENST00000620069 79 ntBASIC21.33■■□□□ 1.01
COL3A1P02461 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC21.33■■□□□ 1.01
COL3A1P02461 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
COL3A1P02461 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
COL3A1P02461 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
COL3A1P02461 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC21.33■■□□□ 1.01
COL3A1P02461 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
COL3A1P02461 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
COL3A1P02461 LRRFIP1P1-201ENST00000498774 2246 ntBASIC21.33■■□□□ 1
COL3A1P02461 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
COL3A1P02461 AC084018.2-201ENST00000613093 2607 ntBASIC21.33■■□□□ 1
COL3A1P02461 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC21.33■■□□□ 1
COL3A1P02461 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC21.33■■□□□ 1
COL3A1P02461 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC21.33■■□□□ 1
COL3A1P02461 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1
COL3A1P02461 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
COL3A1P02461 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC21.33■■□□□ 1
COL3A1P02461 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms