Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
ABCA1O95477 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
ABCA1O95477 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
ABCA1O95477 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC13.78□□□□□ -0.2
ABCA1O95477 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
ABCA1O95477 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.2
ABCA1O95477 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC13.77□□□□□ -0.2
ABCA1O95477 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
ABCA1O95477 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.2
ABCA1O95477 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC13.77□□□□□ -0.2
ABCA1O95477 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.2
ABCA1O95477 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.2
ABCA1O95477 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
ABCA1O95477 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.2
ABCA1O95477 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.2
ABCA1O95477 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
ABCA1O95477 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC13.77□□□□□ -0.2
ABCA1O95477 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
ABCA1O95477 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.2
ABCA1O95477 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC13.77□□□□□ -0.2
ABCA1O95477 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
ABCA1O95477 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC13.77□□□□□ -0.2
ABCA1O95477 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.2
ABCA1O95477 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
ABCA1O95477 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
ABCA1O95477 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
ABCA1O95477 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC13.77□□□□□ -0.21
ABCA1O95477 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
ABCA1O95477 AC098614.1-201ENST00000368528 745 ntBASIC13.77□□□□□ -0.21
ABCA1O95477 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC13.77□□□□□ -0.21
ABCA1O95477 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC13.77□□□□□ -0.21
ABCA1O95477 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
ABCA1O95477 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
ABCA1O95477 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
ABCA1O95477 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
ABCA1O95477 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
ABCA1O95477 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
ABCA1O95477 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
ABCA1O95477 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
ABCA1O95477 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
ABCA1O95477 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
ABCA1O95477 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC13.77□□□□□ -0.21
ABCA1O95477 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
ABCA1O95477 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
ABCA1O95477 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
ABCA1O95477 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
ABCA1O95477 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC13.77□□□□□ -0.21
ABCA1O95477 AL391825.1-201ENST00000457671 1364 ntBASIC13.77□□□□□ -0.21
ABCA1O95477 PCDH8P1-201ENST00000428983 2773 ntBASIC13.77□□□□□ -0.21
ABCA1O95477 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC13.77□□□□□ -0.21
ABCA1O95477 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
ABCA1O95477 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC13.77□□□□□ -0.21
ABCA1O95477 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
ABCA1O95477 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA1O95477 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA1O95477 HNRNPA3P1-201ENST00000401429 1139 ntBASIC13.76□□□□□ -0.21
ABCA1O95477 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA1O95477 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC13.76□□□□□ -0.21
ABCA1O95477 AC009477.1-201ENST00000452936 217 ntBASIC13.76□□□□□ -0.21
ABCA1O95477 TMPRSS11CP-201ENST00000453277 683 ntBASIC13.76□□□□□ -0.21
ABCA1O95477 HNRNPA3P5-201ENST00000455201 833 ntBASIC13.76□□□□□ -0.21
ABCA1O95477 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA1O95477 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA1O95477 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC13.76□□□□□ -0.21
ABCA1O95477 AC073389.1-201ENST00000595595 795 ntBASIC13.76□□□□□ -0.21
ABCA1O95477 AC007967.4-201ENST00000614700 386 ntBASIC13.76□□□□□ -0.21
ABCA1O95477 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA1O95477 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA1O95477 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA1O95477 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
ABCA1O95477 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA1O95477 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA1O95477 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC13.76□□□□□ -0.21
ABCA1O95477 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA1O95477 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA1O95477 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA1O95477 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
ABCA1O95477 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA1O95477 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC13.76□□□□□ -0.21
ABCA1O95477 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA1O95477 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA1O95477 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA1O95477 PP14571-201ENST00000404327 934 ntTSL 2 BASIC13.76□□□□□ -0.21
ABCA1O95477 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC13.76□□□□□ -0.21
ABCA1O95477 AC142381.1-201ENST00000426099 345 ntBASIC13.76□□□□□ -0.21
ABCA1O95477 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA1O95477 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC13.76□□□□□ -0.21
ABCA1O95477 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC13.76□□□□□ -0.21
ABCA1O95477 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC13.76□□□□□ -0.21
ABCA1O95477 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC13.76□□□□□ -0.21
ABCA1O95477 MIR6805-201ENST00000615055 62 ntBASIC13.76□□□□□ -0.21
ABCA1O95477 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA1O95477 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
ABCA1O95477 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC13.76□□□□□ -0.21
ABCA1O95477 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA1O95477 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA1O95477 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC13.76□□□□□ -0.21
ABCA1O95477 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC13.76□□□□□ -0.21
ABCA1O95477 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC13.76□□□□□ -0.21
ABCA1O95477 TSPY26P-202ENST00000565928 3884 ntBASIC13.76□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms