Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC15.11■□□□□ 0.01
NKX2-2O95096 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC15.11■□□□□ 0.01
NKX2-2O95096 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC15.11■□□□□ 0.01
NKX2-2O95096 ELL2P1-201ENST00000413990 1906 ntBASIC15.11■□□□□ 0.01
NKX2-2O95096 GOLGA2P9-201ENST00000596977 1937 ntBASIC15.11■□□□□ 0.01
NKX2-2O95096 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NKX2-2O95096 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
NKX2-2O95096 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
NKX2-2O95096 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
NKX2-2O95096 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NKX2-2O95096 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NKX2-2O95096 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
NKX2-2O95096 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC15.11■□□□□ 0.01
NKX2-2O95096 ACE-204ENST00000428043 5120 ntTSL 2 BASIC15.11■□□□□ 0.01
NKX2-2O95096 PGR-209ENST00000617858 2816 ntTSL 5 BASIC15.11■□□□□ 0.01
NKX2-2O95096 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
NKX2-2O95096 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC15.1■□□□□ 0.01
NKX2-2O95096 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
NKX2-2O95096 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC15.1■□□□□ 0.01
NKX2-2O95096 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC15.1■□□□□ 0.01
NKX2-2O95096 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC15.1■□□□□ 0.01
NKX2-2O95096 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX2-2O95096 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC15.1■□□□□ 0.01
NKX2-2O95096 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC15.1■□□□□ 0.01
NKX2-2O95096 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX2-2O95096 MIR346-201ENST00000362234 95 ntBASIC15.1■□□□□ 0.01
NKX2-2O95096 AC142381.1-201ENST00000426099 345 ntBASIC15.1■□□□□ 0.01
NKX2-2O95096 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC15.1■□□□□ 0.01
NKX2-2O95096 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC15.1■□□□□ 0.01
NKX2-2O95096 AC079140.1-201ENST00000508039 487 ntBASIC15.1■□□□□ 0.01
NKX2-2O95096 RNF34-208ENST00000555076 593 ntTSL 3 BASIC15.1■□□□□ 0.01
NKX2-2O95096 KRT8P23-201ENST00000560090 1207 ntBASIC15.1■□□□□ 0.01
NKX2-2O95096 LINC01225-203ENST00000563550 1244 ntBASIC15.1■□□□□ 0.01
NKX2-2O95096 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC15.1■□□□□ 0.01
NKX2-2O95096 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC15.1■□□□□ 0.01
NKX2-2O95096 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
NKX2-2O95096 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
NKX2-2O95096 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC15.1■□□□□ 0.01
NKX2-2O95096 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
NKX2-2O95096 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC15.1■□□□□ 0.01
NKX2-2O95096 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
NKX2-2O95096 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC15.1■□□□□ 0.01
NKX2-2O95096 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX2-2O95096 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
NKX2-2O95096 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
NKX2-2O95096 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC15.1■□□□□ 0.01
NKX2-2O95096 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX2-2O95096 AL365203.3-201ENST00000609742 2057 ntBASIC15.1■□□□□ 0.01
NKX2-2O95096 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX2-2O95096 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX2-2O95096 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX2-2O95096 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX2-2O95096 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX2-2O95096 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC15.1■□□□□ 0.01
NKX2-2O95096 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
NKX2-2O95096 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC15.09■□□□□ 0.01
NKX2-2O95096 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
NKX2-2O95096 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC15.09■□□□□ 0.01
NKX2-2O95096 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
NKX2-2O95096 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NKX2-2O95096 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
NKX2-2O95096 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
NKX2-2O95096 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC15.09■□□□□ 0.01
NKX2-2O95096 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NKX2-2O95096 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NKX2-2O95096 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
NKX2-2O95096 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
NKX2-2O95096 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
NKX2-2O95096 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NKX2-2O95096 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC15.09■□□□□ 0.01
NKX2-2O95096 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NKX2-2O95096 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
NKX2-2O95096 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC15.09■□□□□ 0.01
NKX2-2O95096 CD82-202ENST00000342935 967 ntTSL 5 BASIC15.09■□□□□ 0.01
NKX2-2O95096 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC15.09■□□□□ 0.01
NKX2-2O95096 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
NKX2-2O95096 TIMM8BP1-201ENST00000452384 211 ntBASIC15.09■□□□□ 0.01
NKX2-2O95096 YBX1P5-201ENST00000509441 847 ntBASIC15.09■□□□□ 0.01
NKX2-2O95096 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC15.09■□□□□ 0.01
NKX2-2O95096 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC15.09■□□□□ 0.01
NKX2-2O95096 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC15.09■□□□□ 0.01
NKX2-2O95096 AP000842.3-202ENST00000569238 1080 ntBASIC15.09■□□□□ 0.01
NKX2-2O95096 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NKX2-2O95096 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC15.09■□□□□ 0.01
NKX2-2O95096 SSH2-211ENST00000590153 570 ntTSL 4 BASIC15.09■□□□□ 0.01
NKX2-2O95096 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC15.09■□□□□ 0.01
NKX2-2O95096 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
NKX2-2O95096 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NKX2-2O95096 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
NKX2-2O95096 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC15.09■□□□□ 0.01
NKX2-2O95096 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NKX2-2O95096 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
NKX2-2O95096 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC15.09■□□□□ 0.01
NKX2-2O95096 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC15.09■□□□□ 0.01
NKX2-2O95096 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NKX2-2O95096 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC15.09■□□□□ 0.01
NKX2-2O95096 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
NKX2-2O95096 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
NKX2-2O95096 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
NKX2-2O95096 CDC14C-201ENST00000428251 1719 ntBASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms