Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 REXO1L8P-201ENST00000604378 1897 ntBASIC15.44■□□□□ 0.06
LDB3O75112 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC15.44■□□□□ 0.06
LDB3O75112 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
LDB3O75112 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
LDB3O75112 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC15.43■□□□□ 0.06
LDB3O75112 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
LDB3O75112 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC15.43■□□□□ 0.06
LDB3O75112 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC15.43■□□□□ 0.06
LDB3O75112 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.43■□□□□ 0.06
LDB3O75112 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
LDB3O75112 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
LDB3O75112 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
LDB3O75112 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
LDB3O75112 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
LDB3O75112 STOM-202ENST00000347359 870 ntTSL 2 BASIC15.43■□□□□ 0.06
LDB3O75112 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
LDB3O75112 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
LDB3O75112 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC15.43■□□□□ 0.06
LDB3O75112 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC15.43■□□□□ 0.06
LDB3O75112 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
LDB3O75112 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC15.43■□□□□ 0.06
LDB3O75112 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC15.43■□□□□ 0.06
LDB3O75112 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC15.43■□□□□ 0.06
LDB3O75112 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC15.43■□□□□ 0.06
LDB3O75112 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
LDB3O75112 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
LDB3O75112 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
LDB3O75112 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC15.43■□□□□ 0.06
LDB3O75112 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
LDB3O75112 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC15.43■□□□□ 0.06
LDB3O75112 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
LDB3O75112 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC15.43■□□□□ 0.06
LDB3O75112 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC15.43■□□□□ 0.06
LDB3O75112 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC15.43■□□□□ 0.06
LDB3O75112 AL691403.2-201ENST00000618460 490 ntBASIC15.43■□□□□ 0.06
LDB3O75112 AL513210.1-201ENST00000629608 234 ntBASIC15.43■□□□□ 0.06
LDB3O75112 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC15.43■□□□□ 0.06
LDB3O75112 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC15.43■□□□□ 0.06
LDB3O75112 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
LDB3O75112 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
LDB3O75112 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
LDB3O75112 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
LDB3O75112 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
LDB3O75112 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
LDB3O75112 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
LDB3O75112 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC15.43■□□□□ 0.06
LDB3O75112 RELA-227ENST00000615805 2236 ntTSL 5 BASIC15.43■□□□□ 0.06
LDB3O75112 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC15.43■□□□□ 0.06
LDB3O75112 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
LDB3O75112 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
LDB3O75112 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC15.43■□□□□ 0.06
LDB3O75112 UXT-AS1-201ENST00000590504 1525 ntBASIC15.43■□□□□ 0.06
LDB3O75112 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
LDB3O75112 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
LDB3O75112 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
LDB3O75112 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
LDB3O75112 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
LDB3O75112 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
LDB3O75112 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
LDB3O75112 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
LDB3O75112 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
LDB3O75112 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LDB3O75112 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
LDB3O75112 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC15.42■□□□□ 0.06
LDB3O75112 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
LDB3O75112 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LDB3O75112 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LDB3O75112 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
LDB3O75112 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC15.42■□□□□ 0.06
LDB3O75112 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LDB3O75112 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LDB3O75112 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
LDB3O75112 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC15.42■□□□□ 0.06
LDB3O75112 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC15.42■□□□□ 0.06
LDB3O75112 DNAJB3-202ENST00000449667 1266 ntBASIC15.42■□□□□ 0.06
LDB3O75112 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC15.42■□□□□ 0.06
LDB3O75112 AC069335.1-201ENST00000489972 472 ntBASIC15.42■□□□□ 0.06
LDB3O75112 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC15.42■□□□□ 0.06
LDB3O75112 AP000344.2-201ENST00000512987 629 ntBASIC15.42■□□□□ 0.06
LDB3O75112 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC15.42■□□□□ 0.06
LDB3O75112 LINC01225-203ENST00000563550 1244 ntBASIC15.42■□□□□ 0.06
LDB3O75112 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC15.42■□□□□ 0.06
LDB3O75112 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC15.42■□□□□ 0.06
LDB3O75112 AC139530.3-201ENST00000620344 690 ntBASIC15.42■□□□□ 0.06
LDB3O75112 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC15.42■□□□□ 0.06
LDB3O75112 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LDB3O75112 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
LDB3O75112 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
LDB3O75112 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC15.42■□□□□ 0.06
LDB3O75112 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC15.42■□□□□ 0.06
LDB3O75112 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
LDB3O75112 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC15.42■□□□□ 0.06
LDB3O75112 GCK-209ENST00000616242 2260 ntTSL 5 BASIC15.42■□□□□ 0.06
LDB3O75112 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LDB3O75112 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC15.42■□□□□ 0.06
LDB3O75112 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
LDB3O75112 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
LDB3O75112 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC15.42■□□□□ 0.06
LDB3O75112 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
LDB3O75112 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms