Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC14.58□□□□□ -0.07
SGCEO43556 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
SGCEO43556 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SGCEO43556 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SGCEO43556 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
SGCEO43556 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SGCEO43556 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
SGCEO43556 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
SGCEO43556 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SGCEO43556 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SGCEO43556 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
SGCEO43556 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
SGCEO43556 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
SGCEO43556 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC14.58□□□□□ -0.08
SGCEO43556 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SGCEO43556 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SGCEO43556 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
SGCEO43556 IGLL3P-201ENST00000412472 434 ntBASIC14.58□□□□□ -0.08
SGCEO43556 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC14.58□□□□□ -0.08
SGCEO43556 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
SGCEO43556 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SGCEO43556 FDX1P1-201ENST00000449115 551 ntBASIC14.58□□□□□ -0.08
SGCEO43556 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC14.58□□□□□ -0.08
SGCEO43556 MTRF1LP2-201ENST00000506027 1122 ntBASIC14.58□□□□□ -0.08
SGCEO43556 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC14.58□□□□□ -0.08
SGCEO43556 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC14.58□□□□□ -0.08
SGCEO43556 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SGCEO43556 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC14.58□□□□□ -0.08
SGCEO43556 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC14.58□□□□□ -0.08
SGCEO43556 AC145285.3-201ENST00000564603 959 ntBASIC14.58□□□□□ -0.08
SGCEO43556 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SGCEO43556 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC14.58□□□□□ -0.08
SGCEO43556 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
SGCEO43556 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC14.58□□□□□ -0.08
SGCEO43556 AL645728.2-201ENST00000641974 660 ntBASIC14.58□□□□□ -0.08
SGCEO43556 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SGCEO43556 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC14.58□□□□□ -0.08
SGCEO43556 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SGCEO43556 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SGCEO43556 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
SGCEO43556 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SGCEO43556 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SGCEO43556 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
SGCEO43556 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
SGCEO43556 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC14.58□□□□□ -0.08
SGCEO43556 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
SGCEO43556 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
SGCEO43556 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SGCEO43556 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC14.58□□□□□ -0.08
SGCEO43556 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
SGCEO43556 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SGCEO43556 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SGCEO43556 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
SGCEO43556 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
SGCEO43556 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
SGCEO43556 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
SGCEO43556 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SGCEO43556 HARS-203ENST00000431330 1774 ntTSL 2 BASIC14.57□□□□□ -0.08
SGCEO43556 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SGCEO43556 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SGCEO43556 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SGCEO43556 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
SGCEO43556 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
SGCEO43556 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SGCEO43556 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
SGCEO43556 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SGCEO43556 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SGCEO43556 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC14.57□□□□□ -0.08
SGCEO43556 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
SGCEO43556 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
SGCEO43556 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
SGCEO43556 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SGCEO43556 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC14.57□□□□□ -0.08
SGCEO43556 ME2P1-201ENST00000426028 1970 ntBASIC14.57□□□□□ -0.08
SGCEO43556 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SGCEO43556 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC14.57□□□□□ -0.08
SGCEO43556 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC14.57□□□□□ -0.08
SGCEO43556 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
SGCEO43556 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
SGCEO43556 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SGCEO43556 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC14.57□□□□□ -0.08
SGCEO43556 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC14.57□□□□□ -0.08
SGCEO43556 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SGCEO43556 AC096734.2-201ENST00000562054 433 ntBASIC14.57□□□□□ -0.08
SGCEO43556 AL031432.2-201ENST00000566714 459 ntBASIC14.57□□□□□ -0.08
SGCEO43556 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC14.57□□□□□ -0.08
SGCEO43556 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC14.57□□□□□ -0.08
SGCEO43556 AL928711.1-201ENST00000570165 459 ntBASIC14.57□□□□□ -0.08
SGCEO43556 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC14.57□□□□□ -0.08
SGCEO43556 AC010507.1-201ENST00000633895 436 ntBASIC14.57□□□□□ -0.08
SGCEO43556 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC14.57□□□□□ -0.08
SGCEO43556 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
SGCEO43556 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
SGCEO43556 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
SGCEO43556 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
SGCEO43556 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC14.57□□□□□ -0.08
SGCEO43556 IL9RP2-201ENST00000423948 1312 ntBASIC14.57□□□□□ -0.08
SGCEO43556 GGT4P-201ENST00000623672 1708 ntBASIC14.57□□□□□ -0.08
SGCEO43556 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
SGCEO43556 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms