Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL6A5A8TX70 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL6A5A8TX70 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
COL6A5A8TX70 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL6A5A8TX70 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC12.47□□□□□ -0.41
COL6A5A8TX70 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL6A5A8TX70 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC12.47□□□□□ -0.41
COL6A5A8TX70 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC12.47□□□□□ -0.41
COL6A5A8TX70 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
COL6A5A8TX70 VMO1-203ENST00000416307 712 ntTSL 2 BASIC12.47□□□□□ -0.41
COL6A5A8TX70 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
COL6A5A8TX70 Z97180.1-201ENST00000445173 988 ntBASIC12.47□□□□□ -0.41
COL6A5A8TX70 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC12.47□□□□□ -0.41
COL6A5A8TX70 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC12.47□□□□□ -0.41
COL6A5A8TX70 AC024681.1-201ENST00000521917 487 ntBASIC12.47□□□□□ -0.41
COL6A5A8TX70 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC12.47□□□□□ -0.41
COL6A5A8TX70 ARPP19-206ENST00000564163 718 ntTSL 2 BASIC12.47□□□□□ -0.41
COL6A5A8TX70 GMFG-209ENST00000600322 622 ntTSL 5 BASIC12.47□□□□□ -0.41
COL6A5A8TX70 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC12.47□□□□□ -0.41
COL6A5A8TX70 WT1-AS_6.1-201ENST00000614919 121 ntBASIC12.47□□□□□ -0.41
COL6A5A8TX70 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC12.47□□□□□ -0.41
COL6A5A8TX70 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC12.47□□□□□ -0.41
COL6A5A8TX70 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL6A5A8TX70 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
COL6A5A8TX70 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC12.47□□□□□ -0.41
COL6A5A8TX70 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
COL6A5A8TX70 RERG-209ENST00000546331 1383 ntTSL 2 BASIC12.47□□□□□ -0.41
COL6A5A8TX70 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
COL6A5A8TX70 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
COL6A5A8TX70 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL6A5A8TX70 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL6A5A8TX70 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
COL6A5A8TX70 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC12.47□□□□□ -0.41
COL6A5A8TX70 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
COL6A5A8TX70 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL6A5A8TX70 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL6A5A8TX70 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
COL6A5A8TX70 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
COL6A5A8TX70 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL6A5A8TX70 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC12.47□□□□□ -0.41
COL6A5A8TX70 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC12.47□□□□□ -0.41
COL6A5A8TX70 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL6A5A8TX70 AC026316.1-201ENST00000398900 414 ntBASIC12.47□□□□□ -0.41
COL6A5A8TX70 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC12.47□□□□□ -0.41
COL6A5A8TX70 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
COL6A5A8TX70 HOMER2P2-201ENST00000451621 847 ntBASIC12.47□□□□□ -0.41
COL6A5A8TX70 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC12.47□□□□□ -0.41
COL6A5A8TX70 ACR-203ENST00000529621 708 ntTSL 5 BASIC12.47□□□□□ -0.41
COL6A5A8TX70 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
COL6A5A8TX70 DNM1P30-201ENST00000563586 452 ntBASIC12.47□□□□□ -0.41
COL6A5A8TX70 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC12.47□□□□□ -0.41
COL6A5A8TX70 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC12.47□□□□□ -0.41
COL6A5A8TX70 AC007663.3-201ENST00000609632 465 ntBASIC12.47□□□□□ -0.41
COL6A5A8TX70 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
COL6A5A8TX70 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
COL6A5A8TX70 AC008132.1-202ENST00000342005 1389 ntBASIC12.47□□□□□ -0.41
COL6A5A8TX70 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL6A5A8TX70 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
COL6A5A8TX70 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
COL6A5A8TX70 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL6A5A8TX70 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
COL6A5A8TX70 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL6A5A8TX70 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL6A5A8TX70 C1QBPP1-201ENST00000400117 770 ntBASIC12.46□□□□□ -0.41
COL6A5A8TX70 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.41
COL6A5A8TX70 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC12.46□□□□□ -0.41
COL6A5A8TX70 FTLP5-201ENST00000586853 534 ntBASIC12.46□□□□□ -0.41
COL6A5A8TX70 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC12.46□□□□□ -0.41
COL6A5A8TX70 BX539320.1-201ENST00000623759 877 ntBASIC12.46□□□□□ -0.41
COL6A5A8TX70 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL6A5A8TX70 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL6A5A8TX70 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC12.46□□□□□ -0.41
COL6A5A8TX70 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
COL6A5A8TX70 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.41
COL6A5A8TX70 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL6A5A8TX70 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL6A5A8TX70 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
COL6A5A8TX70 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
COL6A5A8TX70 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL6A5A8TX70 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
COL6A5A8TX70 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL6A5A8TX70 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC12.46□□□□□ -0.41
COL6A5A8TX70 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL6A5A8TX70 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
COL6A5A8TX70 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
COL6A5A8TX70 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC12.46□□□□□ -0.42
COL6A5A8TX70 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC12.46□□□□□ -0.42
COL6A5A8TX70 RN7SL596P-201ENST00000582123 288 ntBASIC12.46□□□□□ -0.42
COL6A5A8TX70 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.42
COL6A5A8TX70 RNF146-211ENST00000609447 607 ntTSL 4 BASIC12.46□□□□□ -0.42
COL6A5A8TX70 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC12.46□□□□□ -0.42
COL6A5A8TX70 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC12.46□□□□□ -0.42
COL6A5A8TX70 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.42
COL6A5A8TX70 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
COL6A5A8TX70 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
COL6A5A8TX70 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC12.46□□□□□ -0.42
COL6A5A8TX70 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
COL6A5A8TX70 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
COL6A5A8TX70 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
COL6A5A8TX70 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC12.46□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 59.2 ms