Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
SCN11AQ9UI33 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SCN11AQ9UI33 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SCN11AQ9UI33 AC005332.8-201ENST00000622750 2735 ntBASIC20.72■□□□□ 0.91
SCN11AQ9UI33 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
SCN11AQ9UI33 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SCN11AQ9UI33 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC20.72■□□□□ 0.91
SCN11AQ9UI33 ZBTB45P2-201ENST00000452245 1531 ntBASIC20.72■□□□□ 0.91
SCN11AQ9UI33 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SCN11AQ9UI33 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SCN11AQ9UI33 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SCN11AQ9UI33 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
SCN11AQ9UI33 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC20.72■□□□□ 0.91
SCN11AQ9UI33 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SCN11AQ9UI33 USP40-206ENST00000443711 628 ntTSL 2 BASIC20.72■□□□□ 0.91
SCN11AQ9UI33 AP005482.1-201ENST00000563722 1273 ntBASIC20.72■□□□□ 0.91
SCN11AQ9UI33 MIR4259-201ENST00000584466 101 ntBASIC20.72■□□□□ 0.91
SCN11AQ9UI33 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC20.72■□□□□ 0.91
SCN11AQ9UI33 Six3os1_5.1-201ENST00000611000 271 ntBASIC20.72■□□□□ 0.91
SCN11AQ9UI33 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC20.72■□□□□ 0.91
SCN11AQ9UI33 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC20.72■□□□□ 0.91
SCN11AQ9UI33 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC20.72■□□□□ 0.91
SCN11AQ9UI33 RERG-209ENST00000546331 1383 ntTSL 2 BASIC20.71■□□□□ 0.91
SCN11AQ9UI33 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SCN11AQ9UI33 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
SCN11AQ9UI33 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SCN11AQ9UI33 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
SCN11AQ9UI33 EML3-212ENST00000494176 2901 ntTSL 2 BASIC20.71■□□□□ 0.91
SCN11AQ9UI33 EML3-216ENST00000529309 2909 ntTSL 2 BASIC20.71■□□□□ 0.91
SCN11AQ9UI33 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SCN11AQ9UI33 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
SCN11AQ9UI33 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SCN11AQ9UI33 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SCN11AQ9UI33 ALOX12P2-203ENST00000570921 1945 ntBASIC20.71■□□□□ 0.91
SCN11AQ9UI33 AC134407.2-201ENST00000625089 1978 ntBASIC20.71■□□□□ 0.91
SCN11AQ9UI33 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
SCN11AQ9UI33 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC20.71■□□□□ 0.91
SCN11AQ9UI33 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC20.71■□□□□ 0.91
SCN11AQ9UI33 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
SCN11AQ9UI33 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SCN11AQ9UI33 AL512343.1-201ENST00000605837 169 ntBASIC20.71■□□□□ 0.91
SCN11AQ9UI33 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC20.71■□□□□ 0.91
SCN11AQ9UI33 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
SCN11AQ9UI33 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SCN11AQ9UI33 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
SCN11AQ9UI33 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC20.71■□□□□ 0.91
SCN11AQ9UI33 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC20.71■□□□□ 0.91
SCN11AQ9UI33 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
SCN11AQ9UI33 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC20.71■□□□□ 0.91
SCN11AQ9UI33 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC20.7■□□□□ 0.91
SCN11AQ9UI33 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SCN11AQ9UI33 AC080080.1-201ENST00000625121 2420 ntBASIC20.7■□□□□ 0.9
SCN11AQ9UI33 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
SCN11AQ9UI33 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
SCN11AQ9UI33 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SCN11AQ9UI33 MPV17-208ENST00000405076 603 ntTSL 5 BASIC20.7■□□□□ 0.9
SCN11AQ9UI33 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SCN11AQ9UI33 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC20.7■□□□□ 0.9
SCN11AQ9UI33 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC20.7■□□□□ 0.9
SCN11AQ9UI33 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC20.7■□□□□ 0.9
SCN11AQ9UI33 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SCN11AQ9UI33 AL033527.5-201ENST00000641382 801 ntBASIC20.7■□□□□ 0.9
SCN11AQ9UI33 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SCN11AQ9UI33 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SCN11AQ9UI33 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SCN11AQ9UI33 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SCN11AQ9UI33 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
SCN11AQ9UI33 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
SCN11AQ9UI33 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
SCN11AQ9UI33 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC20.7■□□□□ 0.9
SCN11AQ9UI33 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC20.7■□□□□ 0.9
SCN11AQ9UI33 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
SCN11AQ9UI33 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
SCN11AQ9UI33 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SCN11AQ9UI33 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SCN11AQ9UI33 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SCN11AQ9UI33 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SCN11AQ9UI33 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SCN11AQ9UI33 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC20.69■□□□□ 0.9
SCN11AQ9UI33 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC20.69■□□□□ 0.9
SCN11AQ9UI33 NAA38-206ENST00000576384 424 ntTSL 2 BASIC20.69■□□□□ 0.9
SCN11AQ9UI33 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SCN11AQ9UI33 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SCN11AQ9UI33 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SCN11AQ9UI33 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC20.69■□□□□ 0.9
SCN11AQ9UI33 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SCN11AQ9UI33 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SCN11AQ9UI33 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SCN11AQ9UI33 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SCN11AQ9UI33 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SCN11AQ9UI33 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SCN11AQ9UI33 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SCN11AQ9UI33 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
SCN11AQ9UI33 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
SCN11AQ9UI33 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC20.69■□□□□ 0.9
SCN11AQ9UI33 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC20.69■□□□□ 0.9
SCN11AQ9UI33 CROCCP4-201ENST00000457096 498 ntBASIC20.69■□□□□ 0.9
SCN11AQ9UI33 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SCN11AQ9UI33 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC20.69■□□□□ 0.9
SCN11AQ9UI33 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms