Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC17.58■□□□□ 0.41
CNTN3Q9P232 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CNTN3Q9P232 AC100757.3-201ENST00000622361 1406 ntBASIC17.58■□□□□ 0.41
CNTN3Q9P232 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.58■□□□□ 0.41
CNTN3Q9P232 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CNTN3Q9P232 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CNTN3Q9P232 PCDHA14-201ENST00000506751 2298 ntBASIC17.58■□□□□ 0.4
CNTN3Q9P232 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
CNTN3Q9P232 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CNTN3Q9P232 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC17.58■□□□□ 0.4
CNTN3Q9P232 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC17.58■□□□□ 0.4
CNTN3Q9P232 WDR53-203ENST00000429115 683 ntTSL 2 BASIC17.58■□□□□ 0.4
CNTN3Q9P232 AC241585.1-201ENST00000433527 519 ntBASIC17.58■□□□□ 0.4
CNTN3Q9P232 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC17.58■□□□□ 0.4
CNTN3Q9P232 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
CNTN3Q9P232 LY6E-204ENST00000519546 971 ntTSL 2 BASIC17.58■□□□□ 0.4
CNTN3Q9P232 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC17.58■□□□□ 0.4
CNTN3Q9P232 NAA60-208ENST00000570819 833 ntTSL 2 BASIC17.58■□□□□ 0.4
CNTN3Q9P232 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC17.58■□□□□ 0.4
CNTN3Q9P232 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC17.58■□□□□ 0.4
CNTN3Q9P232 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC17.58■□□□□ 0.4
CNTN3Q9P232 MIR4321-201ENST00000592276 80 ntBASIC17.58■□□□□ 0.4
CNTN3Q9P232 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CNTN3Q9P232 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC17.58■□□□□ 0.4
CNTN3Q9P232 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
CNTN3Q9P232 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CNTN3Q9P232 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CNTN3Q9P232 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
CNTN3Q9P232 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CNTN3Q9P232 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CNTN3Q9P232 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CNTN3Q9P232 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CNTN3Q9P232 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CNTN3Q9P232 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC17.58■□□□□ 0.4
CNTN3Q9P232 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
CNTN3Q9P232 CETN4P-206ENST00000642099 2168 ntBASIC17.57■□□□□ 0.4
CNTN3Q9P232 AL592424.1-201ENST00000563624 1536 ntBASIC17.57■□□□□ 0.4
CNTN3Q9P232 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CNTN3Q9P232 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CNTN3Q9P232 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CNTN3Q9P232 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CNTN3Q9P232 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CNTN3Q9P232 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CNTN3Q9P232 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CNTN3Q9P232 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CNTN3Q9P232 ALOX12P2-203ENST00000570921 1945 ntBASIC17.57■□□□□ 0.4
CNTN3Q9P232 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC17.57■□□□□ 0.4
CNTN3Q9P232 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC17.57■□□□□ 0.4
CNTN3Q9P232 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CNTN3Q9P232 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CNTN3Q9P232 RBM39-205ENST00000397370 612 ntTSL 2 BASIC17.57■□□□□ 0.4
CNTN3Q9P232 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC17.57■□□□□ 0.4
CNTN3Q9P232 TSSK5P-201ENST00000423978 907 ntBASIC17.57■□□□□ 0.4
CNTN3Q9P232 MTND6P24-201ENST00000440466 518 ntBASIC17.57■□□□□ 0.4
CNTN3Q9P232 INGX-202ENST00000489074 768 ntBASIC17.57■□□□□ 0.4
CNTN3Q9P232 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC17.57■□□□□ 0.4
CNTN3Q9P232 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC17.57■□□□□ 0.4
CNTN3Q9P232 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC17.57■□□□□ 0.4
CNTN3Q9P232 MIR3197-201ENST00000582241 73 ntBASIC17.57■□□□□ 0.4
CNTN3Q9P232 AC092364.2-202ENST00000597012 1073 ntBASIC17.57■□□□□ 0.4
CNTN3Q9P232 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC17.57■□□□□ 0.4
CNTN3Q9P232 AL590560.3-201ENST00000623350 461 ntBASIC17.57■□□□□ 0.4
CNTN3Q9P232 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
CNTN3Q9P232 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CNTN3Q9P232 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC17.57■□□□□ 0.4
CNTN3Q9P232 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CNTN3Q9P232 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
CNTN3Q9P232 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CNTN3Q9P232 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
CNTN3Q9P232 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CNTN3Q9P232 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
CNTN3Q9P232 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
CNTN3Q9P232 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CNTN3Q9P232 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC17.56■□□□□ 0.4
CNTN3Q9P232 OR6D1P-202ENST00000641007 5290 ntBASIC17.56■□□□□ 0.4
CNTN3Q9P232 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CNTN3Q9P232 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
CNTN3Q9P232 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CNTN3Q9P232 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
CNTN3Q9P232 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CNTN3Q9P232 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.56■□□□□ 0.4
CNTN3Q9P232 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CNTN3Q9P232 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC17.56■□□□□ 0.4
CNTN3Q9P232 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC17.56■□□□□ 0.4
CNTN3Q9P232 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
CNTN3Q9P232 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CNTN3Q9P232 AC004890.2-204ENST00000481968 304 ntBASIC17.56■□□□□ 0.4
CNTN3Q9P232 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC17.56■□□□□ 0.4
CNTN3Q9P232 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CNTN3Q9P232 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC17.56■□□□□ 0.4
CNTN3Q9P232 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CNTN3Q9P232 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC17.56■□□□□ 0.4
CNTN3Q9P232 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC17.56■□□□□ 0.4
CNTN3Q9P232 AC026979.3-201ENST00000607315 403 ntBASIC17.56■□□□□ 0.4
CNTN3Q9P232 AL589739.1-201ENST00000607720 493 ntBASIC17.56■□□□□ 0.4
CNTN3Q9P232 TEX28P1-201ENST00000613479 1221 ntBASIC17.56■□□□□ 0.4
CNTN3Q9P232 TEX28P2-201ENST00000617764 1221 ntBASIC17.56■□□□□ 0.4
CNTN3Q9P232 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
CNTN3Q9P232 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CNTN3Q9P232 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms