Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC18.89■□□□□ 0.61
VPS54Q9P1Q0 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
VPS54Q9P1Q0 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC18.89■□□□□ 0.61
VPS54Q9P1Q0 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC18.89■□□□□ 0.61
VPS54Q9P1Q0 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC18.89■□□□□ 0.61
VPS54Q9P1Q0 AC073389.1-201ENST00000595595 795 ntBASIC18.89■□□□□ 0.61
VPS54Q9P1Q0 NKG7-205ENST00000600427 520 ntTSL 3 BASIC18.89■□□□□ 0.61
VPS54Q9P1Q0 AL513210.1-201ENST00000629608 234 ntBASIC18.89■□□□□ 0.61
VPS54Q9P1Q0 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
VPS54Q9P1Q0 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC18.89■□□□□ 0.61
VPS54Q9P1Q0 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC18.89■□□□□ 0.61
VPS54Q9P1Q0 AL596087.1-201ENST00000400979 1969 ntBASIC18.89■□□□□ 0.61
VPS54Q9P1Q0 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VPS54Q9P1Q0 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC18.89■□□□□ 0.61
VPS54Q9P1Q0 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS54Q9P1Q0 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
VPS54Q9P1Q0 CROCCP1-201ENST00000426910 5675 ntBASIC18.89■□□□□ 0.61
VPS54Q9P1Q0 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC18.89■□□□□ 0.61
VPS54Q9P1Q0 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
VPS54Q9P1Q0 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VPS54Q9P1Q0 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS54Q9P1Q0 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.61
VPS54Q9P1Q0 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
VPS54Q9P1Q0 MTHFR-217ENST00000641820 1569 ntBASIC18.89■□□□□ 0.61
VPS54Q9P1Q0 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC18.88■□□□□ 0.61
VPS54Q9P1Q0 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS54Q9P1Q0 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS54Q9P1Q0 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS54Q9P1Q0 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
VPS54Q9P1Q0 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC18.88■□□□□ 0.61
VPS54Q9P1Q0 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS54Q9P1Q0 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS54Q9P1Q0 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC18.88■□□□□ 0.61
VPS54Q9P1Q0 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS54Q9P1Q0 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS54Q9P1Q0 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
VPS54Q9P1Q0 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC18.88■□□□□ 0.61
VPS54Q9P1Q0 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS54Q9P1Q0 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS54Q9P1Q0 AL592309.1-201ENST00000443127 649 ntBASIC18.88■□□□□ 0.61
VPS54Q9P1Q0 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC18.88■□□□□ 0.61
VPS54Q9P1Q0 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC18.88■□□□□ 0.61
VPS54Q9P1Q0 FHL2-212ENST00000607522 759 ntTSL 2 BASIC18.88■□□□□ 0.61
VPS54Q9P1Q0 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
VPS54Q9P1Q0 AC134684.3-201ENST00000641758 218 ntBASIC18.88■□□□□ 0.61
VPS54Q9P1Q0 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
VPS54Q9P1Q0 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS54Q9P1Q0 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS54Q9P1Q0 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
VPS54Q9P1Q0 AL592424.1-201ENST00000563624 1536 ntBASIC18.88■□□□□ 0.61
VPS54Q9P1Q0 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS54Q9P1Q0 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS54Q9P1Q0 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC18.88■□□□□ 0.61
VPS54Q9P1Q0 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
VPS54Q9P1Q0 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS54Q9P1Q0 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC18.88■□□□□ 0.61
VPS54Q9P1Q0 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC18.88■□□□□ 0.61
VPS54Q9P1Q0 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
VPS54Q9P1Q0 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS54Q9P1Q0 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
VPS54Q9P1Q0 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 MIR1233-2-201ENST00000408138 82 ntBASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 MIR1233-1-201ENST00000408722 82 ntBASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 AC142381.1-201ENST00000426099 345 ntBASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 AC105233.2-201ENST00000523697 349 ntBASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 AF228730.5-201ENST00000530288 346 ntBASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 AP000842.3-202ENST00000569238 1080 ntBASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC18.87■□□□□ 0.61
VPS54Q9P1Q0 U82695.1-201ENST00000635752 1889 ntBASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms