Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC12.35□□□□□ -0.43
LINC00477Q96M19 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00477Q96M19 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00477Q96M19 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC12.35□□□□□ -0.43
LINC00477Q96M19 INIP-202ENST00000374236 874 ntTSL 2 BASIC12.35□□□□□ -0.43
LINC00477Q96M19 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
LINC00477Q96M19 MIR648-201ENST00000385046 94 ntBASIC12.35□□□□□ -0.43
LINC00477Q96M19 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00477Q96M19 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00477Q96M19 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00477Q96M19 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC12.35□□□□□ -0.43
LINC00477Q96M19 KRT18P27-201ENST00000427733 1299 ntBASIC12.35□□□□□ -0.43
LINC00477Q96M19 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC12.35□□□□□ -0.43
LINC00477Q96M19 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC12.35□□□□□ -0.43
LINC00477Q96M19 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC12.35□□□□□ -0.43
LINC00477Q96M19 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC12.35□□□□□ -0.43
LINC00477Q96M19 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC12.35□□□□□ -0.43
LINC00477Q96M19 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC12.35□□□□□ -0.43
LINC00477Q96M19 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC12.35□□□□□ -0.43
LINC00477Q96M19 ETFA-208ENST00000559602 792 ntTSL 3 BASIC12.35□□□□□ -0.43
LINC00477Q96M19 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00477Q96M19 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC12.35□□□□□ -0.43
LINC00477Q96M19 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC12.35□□□□□ -0.43
LINC00477Q96M19 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC12.35□□□□□ -0.43
LINC00477Q96M19 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC12.35□□□□□ -0.43
LINC00477Q96M19 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00477Q96M19 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00477Q96M19 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00477Q96M19 REXO1L8P-201ENST00000604378 1897 ntBASIC12.35□□□□□ -0.43
LINC00477Q96M19 AC012569.1-201ENST00000591191 1524 ntBASIC12.35□□□□□ -0.43
LINC00477Q96M19 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
LINC00477Q96M19 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC12.35□□□□□ -0.43
LINC00477Q96M19 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC12.35□□□□□ -0.43
LINC00477Q96M19 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00477Q96M19 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC12.35□□□□□ -0.43
LINC00477Q96M19 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00477Q96M19 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC12.35□□□□□ -0.43
LINC00477Q96M19 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00477Q96M19 AC105917.1-201ENST00000506637 2539 ntBASIC12.35□□□□□ -0.43
LINC00477Q96M19 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00477Q96M19 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC12.35□□□□□ -0.43
LINC00477Q96M19 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00477Q96M19 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00477Q96M19 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC12.34□□□□□ -0.43
LINC00477Q96M19 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC12.34□□□□□ -0.43
LINC00477Q96M19 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00477Q96M19 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00477Q96M19 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00477Q96M19 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00477Q96M19 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC12.34□□□□□ -0.43
LINC00477Q96M19 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
LINC00477Q96M19 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00477Q96M19 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00477Q96M19 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00477Q96M19 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
LINC00477Q96M19 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00477Q96M19 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC12.34□□□□□ -0.43
LINC00477Q96M19 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
LINC00477Q96M19 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC12.34□□□□□ -0.43
LINC00477Q96M19 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00477Q96M19 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00477Q96M19 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC12.34□□□□□ -0.43
LINC00477Q96M19 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00477Q96M19 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC12.34□□□□□ -0.43
LINC00477Q96M19 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00477Q96M19 AC024909.3-201ENST00000611513 2257 ntBASIC12.34□□□□□ -0.43
LINC00477Q96M19 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00477Q96M19 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00477Q96M19 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00477Q96M19 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00477Q96M19 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC12.34□□□□□ -0.43
LINC00477Q96M19 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00477Q96M19 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00477Q96M19 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00477Q96M19 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
LINC00477Q96M19 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC12.34□□□□□ -0.43
LINC00477Q96M19 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00477Q96M19 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
LINC00477Q96M19 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC12.34□□□□□ -0.43
LINC00477Q96M19 AF238378.1-201ENST00000526806 358 ntBASIC12.34□□□□□ -0.43
LINC00477Q96M19 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC12.34□□□□□ -0.43
LINC00477Q96M19 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC12.34□□□□□ -0.43
LINC00477Q96M19 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC12.34□□□□□ -0.43
LINC00477Q96M19 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC12.34□□□□□ -0.43
LINC00477Q96M19 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC12.34□□□□□ -0.43
LINC00477Q96M19 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC12.34□□□□□ -0.43
LINC00477Q96M19 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC12.34□□□□□ -0.43
LINC00477Q96M19 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00477Q96M19 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00477Q96M19 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00477Q96M19 MST1L-201ENST00000442552 2185 ntBASIC12.34□□□□□ -0.43
LINC00477Q96M19 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
LINC00477Q96M19 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC12.34□□□□□ -0.43
LINC00477Q96M19 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00477Q96M19 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00477Q96M19 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
LINC00477Q96M19 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00477Q96M19 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00477Q96M19 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC12.34□□□□□ -0.43
LINC00477Q96M19 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 11.1 ms