Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SYNE4Q8N205 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC20.26■□□□□ 0.83
SYNE4Q8N205 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SYNE4Q8N205 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
SYNE4Q8N205 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC20.26■□□□□ 0.83
SYNE4Q8N205 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC20.26■□□□□ 0.83
SYNE4Q8N205 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SYNE4Q8N205 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
SYNE4Q8N205 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SYNE4Q8N205 LETM1P2-201ENST00000597330 2178 ntBASIC20.25■□□□□ 0.83
SYNE4Q8N205 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SYNE4Q8N205 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
SYNE4Q8N205 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
SYNE4Q8N205 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SYNE4Q8N205 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SYNE4Q8N205 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SYNE4Q8N205 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SYNE4Q8N205 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SYNE4Q8N205 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
SYNE4Q8N205 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SYNE4Q8N205 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC20.25■□□□□ 0.83
SYNE4Q8N205 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SYNE4Q8N205 SDHAP3-202ENST00000515467 728 ntBASIC20.25■□□□□ 0.83
SYNE4Q8N205 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
SYNE4Q8N205 RAB43P1-201ENST00000561790 589 ntBASIC20.25■□□□□ 0.83
SYNE4Q8N205 AC106886.1-201ENST00000568660 600 ntBASIC20.25■□□□□ 0.83
SYNE4Q8N205 CTBP2P3-201ENST00000585629 1255 ntBASIC20.25■□□□□ 0.83
SYNE4Q8N205 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC20.25■□□□□ 0.83
SYNE4Q8N205 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC20.25■□□□□ 0.83
SYNE4Q8N205 AC007431.3-201ENST00000623221 587 ntBASIC20.25■□□□□ 0.83
SYNE4Q8N205 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC20.25■□□□□ 0.83
SYNE4Q8N205 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SYNE4Q8N205 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC20.25■□□□□ 0.83
SYNE4Q8N205 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC20.25■□□□□ 0.83
SYNE4Q8N205 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC20.25■□□□□ 0.83
SYNE4Q8N205 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
SYNE4Q8N205 AC106886.4-201ENST00000623557 2502 ntBASIC20.25■□□□□ 0.83
SYNE4Q8N205 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SYNE4Q8N205 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC20.25■□□□□ 0.83
SYNE4Q8N205 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SYNE4Q8N205 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC20.25■□□□□ 0.83
SYNE4Q8N205 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SYNE4Q8N205 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SYNE4Q8N205 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SYNE4Q8N205 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SYNE4Q8N205 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC20.24■□□□□ 0.83
SYNE4Q8N205 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SYNE4Q8N205 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
SYNE4Q8N205 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
SYNE4Q8N205 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC20.24■□□□□ 0.83
SYNE4Q8N205 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
SYNE4Q8N205 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
SYNE4Q8N205 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SYNE4Q8N205 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC20.24■□□□□ 0.83
SYNE4Q8N205 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC20.24■□□□□ 0.83
SYNE4Q8N205 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC20.24■□□□□ 0.83
SYNE4Q8N205 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SYNE4Q8N205 FTH1-202ENST00000526640 786 ntTSL 2 BASIC20.24■□□□□ 0.83
SYNE4Q8N205 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
SYNE4Q8N205 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
SYNE4Q8N205 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC20.24■□□□□ 0.83
SYNE4Q8N205 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC20.24■□□□□ 0.83
SYNE4Q8N205 AC026979.3-201ENST00000607315 403 ntBASIC20.24■□□□□ 0.83
SYNE4Q8N205 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SYNE4Q8N205 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SYNE4Q8N205 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
SYNE4Q8N205 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
SYNE4Q8N205 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC20.24■□□□□ 0.83
SYNE4Q8N205 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SYNE4Q8N205 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC20.24■□□□□ 0.83
SYNE4Q8N205 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SYNE4Q8N205 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SYNE4Q8N205 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SYNE4Q8N205 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC20.24■□□□□ 0.83
SYNE4Q8N205 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SYNE4Q8N205 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SYNE4Q8N205 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SYNE4Q8N205 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC20.23■□□□□ 0.83
SYNE4Q8N205 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC20.23■□□□□ 0.83
SYNE4Q8N205 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC20.23■□□□□ 0.83
SYNE4Q8N205 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SYNE4Q8N205 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
SYNE4Q8N205 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SYNE4Q8N205 SERBP1P3-201ENST00000459980 809 ntBASIC20.23■□□□□ 0.83
SYNE4Q8N205 AC093004.1-201ENST00000508850 424 ntBASIC20.23■□□□□ 0.83
SYNE4Q8N205 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC20.23■□□□□ 0.83
SYNE4Q8N205 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
SYNE4Q8N205 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC20.23■□□□□ 0.83
SYNE4Q8N205 CYP4F24P-201ENST00000586049 1580 ntBASIC20.23■□□□□ 0.83
SYNE4Q8N205 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC20.23■□□□□ 0.83
SYNE4Q8N205 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC20.23■□□□□ 0.83
SYNE4Q8N205 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SYNE4Q8N205 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SYNE4Q8N205 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SYNE4Q8N205 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SYNE4Q8N205 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SYNE4Q8N205 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SYNE4Q8N205 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC20.23■□□□□ 0.83
SYNE4Q8N205 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SYNE4Q8N205 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms