Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC17.72■□□□□ 0.43
KRT39Q6A163 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC17.72■□□□□ 0.43
KRT39Q6A163 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC17.72■□□□□ 0.43
KRT39Q6A163 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
KRT39Q6A163 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC17.72■□□□□ 0.43
KRT39Q6A163 AC073389.1-201ENST00000595595 795 ntBASIC17.72■□□□□ 0.43
KRT39Q6A163 FHL2-212ENST00000607522 759 ntTSL 2 BASIC17.72■□□□□ 0.43
KRT39Q6A163 AC026120.1-201ENST00000611536 926 ntBASIC17.72■□□□□ 0.43
KRT39Q6A163 HOTTIP_1.1-201ENST00000620415 57 ntBASIC17.72■□□□□ 0.43
KRT39Q6A163 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
KRT39Q6A163 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
KRT39Q6A163 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
KRT39Q6A163 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
KRT39Q6A163 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
KRT39Q6A163 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
KRT39Q6A163 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
KRT39Q6A163 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC17.72■□□□□ 0.43
KRT39Q6A163 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC17.72■□□□□ 0.43
KRT39Q6A163 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.72■□□□□ 0.43
KRT39Q6A163 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC17.72■□□□□ 0.43
KRT39Q6A163 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
KRT39Q6A163 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
KRT39Q6A163 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
KRT39Q6A163 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
KRT39Q6A163 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
KRT39Q6A163 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC17.71■□□□□ 0.43
KRT39Q6A163 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
KRT39Q6A163 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
KRT39Q6A163 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
KRT39Q6A163 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
KRT39Q6A163 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
KRT39Q6A163 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
KRT39Q6A163 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
KRT39Q6A163 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC17.71■□□□□ 0.43
KRT39Q6A163 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
KRT39Q6A163 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC17.71■□□□□ 0.43
KRT39Q6A163 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
KRT39Q6A163 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC17.71■□□□□ 0.43
KRT39Q6A163 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC17.71■□□□□ 0.43
KRT39Q6A163 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC17.71■□□□□ 0.43
KRT39Q6A163 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC17.71■□□□□ 0.43
KRT39Q6A163 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC17.71■□□□□ 0.43
KRT39Q6A163 AL138918.1-201ENST00000568306 659 ntBASIC17.71■□□□□ 0.43
KRT39Q6A163 AC005829.1-201ENST00000570002 483 ntBASIC17.71■□□□□ 0.43
KRT39Q6A163 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
KRT39Q6A163 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
KRT39Q6A163 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
KRT39Q6A163 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
KRT39Q6A163 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
KRT39Q6A163 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.71■□□□□ 0.43
KRT39Q6A163 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
KRT39Q6A163 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
KRT39Q6A163 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC17.71■□□□□ 0.43
KRT39Q6A163 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC17.71■□□□□ 0.43
KRT39Q6A163 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
KRT39Q6A163 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
KRT39Q6A163 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.43
KRT39Q6A163 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.42
KRT39Q6A163 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
KRT39Q6A163 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
KRT39Q6A163 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC17.7■□□□□ 0.42
KRT39Q6A163 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
KRT39Q6A163 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
KRT39Q6A163 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
KRT39Q6A163 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
KRT39Q6A163 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
KRT39Q6A163 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
KRT39Q6A163 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
KRT39Q6A163 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC17.7■□□□□ 0.42
KRT39Q6A163 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
KRT39Q6A163 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC17.7■□□□□ 0.42
KRT39Q6A163 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC17.7■□□□□ 0.42
KRT39Q6A163 SPDYE11-202ENST00000450699 704 ntBASIC17.7■□□□□ 0.42
KRT39Q6A163 AC243562.1-201ENST00000560672 389 ntBASIC17.7■□□□□ 0.42
KRT39Q6A163 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC17.7■□□□□ 0.42
KRT39Q6A163 SPDYE9P-201ENST00000570642 692 ntBASIC17.7■□□□□ 0.42
KRT39Q6A163 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC17.7■□□□□ 0.42
KRT39Q6A163 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC17.7■□□□□ 0.42
KRT39Q6A163 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
KRT39Q6A163 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
KRT39Q6A163 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC17.7■□□□□ 0.42
KRT39Q6A163 SPDYE10P-202ENST00000612005 668 ntBASIC17.7■□□□□ 0.42
KRT39Q6A163 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
KRT39Q6A163 SPDYE8P-202ENST00000612377 668 ntBASIC17.7■□□□□ 0.42
KRT39Q6A163 AC008267.7-201ENST00000624570 1194 ntBASIC17.7■□□□□ 0.42
KRT39Q6A163 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC17.7■□□□□ 0.42
KRT39Q6A163 AL589702.1-201ENST00000641229 1509 ntBASIC17.7■□□□□ 0.42
KRT39Q6A163 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC17.7■□□□□ 0.42
KRT39Q6A163 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
KRT39Q6A163 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
KRT39Q6A163 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
KRT39Q6A163 ELL2P1-201ENST00000413990 1906 ntBASIC17.7■□□□□ 0.42
KRT39Q6A163 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
KRT39Q6A163 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
KRT39Q6A163 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
KRT39Q6A163 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
KRT39Q6A163 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
KRT39Q6A163 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
KRT39Q6A163 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
KRT39Q6A163 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 163.9 ms