Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ABCA4P78363 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
ABCA4P78363 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC14.1□□□□□ -0.15
ABCA4P78363 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ABCA4P78363 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ABCA4P78363 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC14.1□□□□□ -0.15
ABCA4P78363 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC14.1□□□□□ -0.15
ABCA4P78363 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
ABCA4P78363 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ABCA4P78363 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ABCA4P78363 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ABCA4P78363 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
ABCA4P78363 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
ABCA4P78363 MIR658-201ENST00000385210 100 ntBASIC14.1□□□□□ -0.15
ABCA4P78363 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC14.1□□□□□ -0.15
ABCA4P78363 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC14.1□□□□□ -0.15
ABCA4P78363 GNAQP1-201ENST00000444815 1067 ntBASIC14.1□□□□□ -0.15
ABCA4P78363 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC14.1□□□□□ -0.15
ABCA4P78363 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC14.1□□□□□ -0.15
ABCA4P78363 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC14.1□□□□□ -0.15
ABCA4P78363 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ABCA4P78363 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC14.1□□□□□ -0.15
ABCA4P78363 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ABCA4P78363 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC14.09□□□□□ -0.15
ABCA4P78363 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC14.09□□□□□ -0.15
ABCA4P78363 GATB-213ENST00000515812 1893 ntTSL 5 BASIC14.09□□□□□ -0.15
ABCA4P78363 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ABCA4P78363 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ABCA4P78363 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC14.09□□□□□ -0.15
ABCA4P78363 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC14.09□□□□□ -0.15
ABCA4P78363 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC14.09□□□□□ -0.15
ABCA4P78363 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
ABCA4P78363 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ABCA4P78363 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
ABCA4P78363 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ABCA4P78363 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ABCA4P78363 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC14.09□□□□□ -0.15
ABCA4P78363 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
ABCA4P78363 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
ABCA4P78363 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC14.09□□□□□ -0.15
ABCA4P78363 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC14.09□□□□□ -0.15
ABCA4P78363 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
ABCA4P78363 AC135586.1-201ENST00000539323 574 ntBASIC14.09□□□□□ -0.15
ABCA4P78363 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ABCA4P78363 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
ABCA4P78363 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC14.09□□□□□ -0.15
ABCA4P78363 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
ABCA4P78363 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
ABCA4P78363 ING5-213ENST00000636051 4199 ntTSL 5 BASIC14.09□□□□□ -0.15
ABCA4P78363 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ABCA4P78363 PKD1P5-201ENST00000532415 10291 ntBASIC14.09□□□□□ -0.15
ABCA4P78363 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC14.09□□□□□ -0.15
ABCA4P78363 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ABCA4P78363 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
ABCA4P78363 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
ABCA4P78363 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ABCA4P78363 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
ABCA4P78363 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
ABCA4P78363 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ABCA4P78363 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
ABCA4P78363 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ABCA4P78363 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
ABCA4P78363 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC14.09□□□□□ -0.15
ABCA4P78363 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC14.09□□□□□ -0.15
ABCA4P78363 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
ABCA4P78363 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC14.08□□□□□ -0.15
ABCA4P78363 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC14.08□□□□□ -0.15
ABCA4P78363 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC14.08□□□□□ -0.15
ABCA4P78363 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC14.08□□□□□ -0.15
ABCA4P78363 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC14.08□□□□□ -0.15
ABCA4P78363 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
ABCA4P78363 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
ABCA4P78363 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.15
ABCA4P78363 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.15
ABCA4P78363 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.15
ABCA4P78363 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC14.08□□□□□ -0.15
ABCA4P78363 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC14.08□□□□□ -0.15
ABCA4P78363 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
ABCA4P78363 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC14.08□□□□□ -0.15
ABCA4P78363 AC092552.1-201ENST00000547243 906 ntBASIC14.08□□□□□ -0.15
ABCA4P78363 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.15
ABCA4P78363 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC14.08□□□□□ -0.15
ABCA4P78363 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
ABCA4P78363 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.15
ABCA4P78363 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC14.08□□□□□ -0.15
ABCA4P78363 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.15
ABCA4P78363 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
ABCA4P78363 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
ABCA4P78363 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC14.08□□□□□ -0.16
ABCA4P78363 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC14.08□□□□□ -0.16
ABCA4P78363 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
ABCA4P78363 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
ABCA4P78363 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
ABCA4P78363 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
ABCA4P78363 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
ABCA4P78363 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
ABCA4P78363 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
ABCA4P78363 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
ABCA4P78363 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC14.08□□□□□ -0.16
ABCA4P78363 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms