Protein–RNA interactions for Protein: P56159

GFRA1, GDNF family receptor alpha-1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA1P56159 SATB1-217ENST00000493952 626 ntTSL 3 BASIC14.66□□□□□ -0.06
GFRA1P56159 AQP6-203ENST00000551733 849 ntTSL 3 BASIC14.66□□□□□ -0.06
GFRA1P56159 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC14.66□□□□□ -0.06
GFRA1P56159 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC14.66□□□□□ -0.06
GFRA1P56159 MIR4321-201ENST00000592276 80 ntBASIC14.66□□□□□ -0.06
GFRA1P56159 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC14.66□□□□□ -0.06
GFRA1P56159 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC14.66□□□□□ -0.06
GFRA1P56159 RN7SL828P-201ENST00000607615 303 ntBASIC14.66□□□□□ -0.06
GFRA1P56159 GPER1-207ENST00000619052 571 ntTSL 2 BASIC14.66□□□□□ -0.06
GFRA1P56159 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
GFRA1P56159 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
GFRA1P56159 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
GFRA1P56159 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
GFRA1P56159 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
GFRA1P56159 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
GFRA1P56159 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
GFRA1P56159 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
GFRA1P56159 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
GFRA1P56159 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC14.66□□□□□ -0.06
GFRA1P56159 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
GFRA1P56159 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC14.66□□□□□ -0.06
GFRA1P56159 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
GFRA1P56159 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
GFRA1P56159 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC14.66□□□□□ -0.06
GFRA1P56159 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC14.65□□□□□ -0.06
GFRA1P56159 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
GFRA1P56159 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
GFRA1P56159 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC14.65□□□□□ -0.06
GFRA1P56159 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
GFRA1P56159 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC14.65□□□□□ -0.06
GFRA1P56159 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
GFRA1P56159 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
GFRA1P56159 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
GFRA1P56159 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC14.65□□□□□ -0.06
GFRA1P56159 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
GFRA1P56159 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC14.65□□□□□ -0.06
GFRA1P56159 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC14.65□□□□□ -0.06
GFRA1P56159 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
GFRA1P56159 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
GFRA1P56159 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
GFRA1P56159 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC14.65□□□□□ -0.06
GFRA1P56159 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
GFRA1P56159 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
GFRA1P56159 CENPM-205ENST00000404067 905 ntTSL 3 BASIC14.65□□□□□ -0.06
GFRA1P56159 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC14.65□□□□□ -0.06
GFRA1P56159 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC14.65□□□□□ -0.06
GFRA1P56159 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC14.65□□□□□ -0.06
GFRA1P56159 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC14.65□□□□□ -0.06
GFRA1P56159 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
GFRA1P56159 HLA-V-204ENST00000476601 1289 ntBASIC14.65□□□□□ -0.06
GFRA1P56159 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
GFRA1P56159 SPCS2P1-201ENST00000561636 679 ntBASIC14.65□□□□□ -0.06
GFRA1P56159 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
GFRA1P56159 AL133215.2-201ENST00000609242 977 ntBASIC14.65□□□□□ -0.06
GFRA1P56159 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
GFRA1P56159 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC14.65□□□□□ -0.06
GFRA1P56159 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
GFRA1P56159 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
GFRA1P56159 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
GFRA1P56159 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
GFRA1P56159 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
GFRA1P56159 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
GFRA1P56159 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
GFRA1P56159 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC14.64□□□□□ -0.07
GFRA1P56159 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC14.64□□□□□ -0.07
GFRA1P56159 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
GFRA1P56159 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
GFRA1P56159 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC14.64□□□□□ -0.07
GFRA1P56159 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
GFRA1P56159 AC099398.1-201ENST00000567919 2776 ntBASIC14.64□□□□□ -0.07
GFRA1P56159 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
GFRA1P56159 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
GFRA1P56159 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
GFRA1P56159 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
GFRA1P56159 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
GFRA1P56159 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
GFRA1P56159 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
GFRA1P56159 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
GFRA1P56159 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
GFRA1P56159 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
GFRA1P56159 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
GFRA1P56159 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC14.64□□□□□ -0.07
GFRA1P56159 BASP1P1-201ENST00000430708 665 ntBASIC14.64□□□□□ -0.07
GFRA1P56159 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
GFRA1P56159 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC14.64□□□□□ -0.07
GFRA1P56159 AC093214.1-201ENST00000511688 1107 ntBASIC14.64□□□□□ -0.07
GFRA1P56159 RNA5SP421-201ENST00000516864 134 ntBASIC14.64□□□□□ -0.07
GFRA1P56159 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC14.64□□□□□ -0.07
GFRA1P56159 NAA38-207ENST00000576861 556 ntTSL 3 BASIC14.64□□□□□ -0.07
GFRA1P56159 AC011467.4-201ENST00000594891 528 ntBASIC14.64□□□□□ -0.07
GFRA1P56159 SPDYE12P-201ENST00000618416 771 ntBASIC14.64□□□□□ -0.07
GFRA1P56159 AC073592.8-201ENST00000624126 511 ntBASIC14.64□□□□□ -0.07
GFRA1P56159 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
GFRA1P56159 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
GFRA1P56159 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC14.64□□□□□ -0.07
GFRA1P56159 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
GFRA1P56159 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
GFRA1P56159 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC14.64□□□□□ -0.07
GFRA1P56159 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC14.64□□□□□ -0.07
GFRA1P56159 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms