Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC17.6■□□□□ 0.41
VCPP55072 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC17.6■□□□□ 0.41
VCPP55072 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC17.6■□□□□ 0.41
VCPP55072 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
VCPP55072 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VCPP55072 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
VCPP55072 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
VCPP55072 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
VCPP55072 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VCPP55072 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC17.59■□□□□ 0.41
VCPP55072 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VCPP55072 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VCPP55072 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VCPP55072 AL391256.1-201ENST00000443260 1855 ntBASIC17.59■□□□□ 0.41
VCPP55072 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC17.59■□□□□ 0.41
VCPP55072 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VCPP55072 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC17.59■□□□□ 0.41
VCPP55072 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
VCPP55072 AC008677.1-201ENST00000519230 1561 ntBASIC17.59■□□□□ 0.41
VCPP55072 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VCPP55072 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
VCPP55072 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
VCPP55072 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
VCPP55072 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
VCPP55072 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VCPP55072 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VCPP55072 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC17.59■□□□□ 0.41
VCPP55072 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC17.59■□□□□ 0.41
VCPP55072 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC17.59■□□□□ 0.41
VCPP55072 U91328.1-201ENST00000437528 223 ntBASIC17.59■□□□□ 0.41
VCPP55072 IGHV3-71-201ENST00000523324 359 ntBASIC17.59■□□□□ 0.41
VCPP55072 FAM86C2P-203ENST00000528684 1004 ntBASIC17.59■□□□□ 0.41
VCPP55072 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC17.59■□□□□ 0.41
VCPP55072 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
VCPP55072 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
VCPP55072 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC17.59■□□□□ 0.41
VCPP55072 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
VCPP55072 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VCPP55072 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
VCPP55072 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VCPP55072 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VCPP55072 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VCPP55072 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC17.59■□□□□ 0.41
VCPP55072 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.59■□□□□ 0.41
VCPP55072 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC17.59■□□□□ 0.41
VCPP55072 AC006449.5-201ENST00000610658 2098 ntBASIC17.59■□□□□ 0.41
VCPP55072 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC17.59■□□□□ 0.41
VCPP55072 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VCPP55072 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
VCPP55072 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
VCPP55072 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
VCPP55072 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
VCPP55072 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
VCPP55072 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
VCPP55072 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
VCPP55072 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
VCPP55072 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC17.58■□□□□ 0.41
VCPP55072 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
VCPP55072 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
VCPP55072 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
VCPP55072 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.58■□□□□ 0.41
VCPP55072 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
VCPP55072 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC17.58■□□□□ 0.4
VCPP55072 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
VCPP55072 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
VCPP55072 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC17.58■□□□□ 0.4
VCPP55072 RPL28-209ENST00000560055 670 ntTSL 3 BASIC17.58■□□□□ 0.4
VCPP55072 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC17.58■□□□□ 0.4
VCPP55072 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
VCPP55072 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
VCPP55072 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VCPP55072 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
VCPP55072 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC17.58■□□□□ 0.4
VCPP55072 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VCPP55072 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VCPP55072 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC17.58■□□□□ 0.4
VCPP55072 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VCPP55072 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
VCPP55072 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC17.57■□□□□ 0.4
VCPP55072 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VCPP55072 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VCPP55072 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
VCPP55072 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VCPP55072 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.57■□□□□ 0.4
VCPP55072 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VCPP55072 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VCPP55072 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VCPP55072 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
VCPP55072 PIN1P1-201ENST00000412108 996 ntBASIC17.57■□□□□ 0.4
VCPP55072 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC17.57■□□□□ 0.4
VCPP55072 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC17.57■□□□□ 0.4
VCPP55072 KRT17P7-201ENST00000451704 1104 ntBASIC17.57■□□□□ 0.4
VCPP55072 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC17.57■□□□□ 0.4
VCPP55072 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC17.57■□□□□ 0.4
VCPP55072 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VCPP55072 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC17.57■□□□□ 0.4
VCPP55072 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC17.57■□□□□ 0.4
VCPP55072 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC17.57■□□□□ 0.4
VCPP55072 AC084346.2-201ENST00000607097 949 ntBASIC17.57■□□□□ 0.4
VCPP55072 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms