Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AP000842.3-202ENST00000569238 1080 ntBASIC17.04■□□□□ 0.32
PTPN9P43378 MIR4469-201ENST00000583919 79 ntBASIC17.04■□□□□ 0.32
PTPN9P43378 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC17.04■□□□□ 0.32
PTPN9P43378 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC17.04■□□□□ 0.32
PTPN9P43378 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC17.04■□□□□ 0.32
PTPN9P43378 SPTSSB-204ENST00000617024 1292 ntBASIC17.04■□□□□ 0.32
PTPN9P43378 AC105339.1-204ENST00000636249 355 ntBASIC17.04■□□□□ 0.32
PTPN9P43378 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
PTPN9P43378 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN9P43378 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN9P43378 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
PTPN9P43378 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC17.04■□□□□ 0.32
PTPN9P43378 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
PTPN9P43378 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN9P43378 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN9P43378 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN9P43378 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN9P43378 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN9P43378 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN9P43378 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN9P43378 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PTPN9P43378 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTPN9P43378 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PTPN9P43378 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PTPN9P43378 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTPN9P43378 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC17.03■□□□□ 0.32
PTPN9P43378 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC17.03■□□□□ 0.32
PTPN9P43378 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTPN9P43378 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC17.03■□□□□ 0.32
PTPN9P43378 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PTPN9P43378 PTMS-202ENST00000389462 773 ntTSL 2 BASIC17.03■□□□□ 0.32
PTPN9P43378 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC17.03■□□□□ 0.32
PTPN9P43378 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC17.03■□□□□ 0.32
PTPN9P43378 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC17.03■□□□□ 0.32
PTPN9P43378 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC17.03■□□□□ 0.32
PTPN9P43378 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC17.03■□□□□ 0.32
PTPN9P43378 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC17.03■□□□□ 0.32
PTPN9P43378 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC17.03■□□□□ 0.32
PTPN9P43378 MIR4321-201ENST00000592276 80 ntBASIC17.03■□□□□ 0.32
PTPN9P43378 AC022145.2-201ENST00000598203 171 ntBASIC17.03■□□□□ 0.32
PTPN9P43378 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC17.03■□□□□ 0.32
PTPN9P43378 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC17.03■□□□□ 0.32
PTPN9P43378 AL513210.1-201ENST00000629608 234 ntBASIC17.03■□□□□ 0.32
PTPN9P43378 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
PTPN9P43378 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC17.03■□□□□ 0.32
PTPN9P43378 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTPN9P43378 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTPN9P43378 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC17.03■□□□□ 0.32
PTPN9P43378 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC17.03■□□□□ 0.32
PTPN9P43378 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
PTPN9P43378 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC17.03■□□□□ 0.32
PTPN9P43378 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTPN9P43378 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTPN9P43378 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTPN9P43378 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTPN9P43378 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTPN9P43378 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PTPN9P43378 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
PTPN9P43378 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PTPN9P43378 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PTPN9P43378 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.32
PTPN9P43378 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.02■□□□□ 0.32
PTPN9P43378 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
PTPN9P43378 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC17.02■□□□□ 0.32
PTPN9P43378 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
PTPN9P43378 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PTPN9P43378 STOM-202ENST00000347359 870 ntTSL 2 BASIC17.02■□□□□ 0.32
PTPN9P43378 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC17.02■□□□□ 0.32
PTPN9P43378 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PTPN9P43378 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC17.02■□□□□ 0.32
PTPN9P43378 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC17.02■□□□□ 0.32
PTPN9P43378 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PTPN9P43378 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC17.02■□□□□ 0.32
PTPN9P43378 IGHV3-62-201ENST00000520057 340 ntBASIC17.02■□□□□ 0.32
PTPN9P43378 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC17.02■□□□□ 0.32
PTPN9P43378 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PTPN9P43378 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC17.02■□□□□ 0.32
PTPN9P43378 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC17.02■□□□□ 0.32
PTPN9P43378 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PTPN9P43378 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
PTPN9P43378 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC17.02■□□□□ 0.31
PTPN9P43378 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
PTPN9P43378 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC17.02■□□□□ 0.31
PTPN9P43378 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
PTPN9P43378 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
PTPN9P43378 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
PTPN9P43378 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
PTPN9P43378 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
PTPN9P43378 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PTPN9P43378 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC17.01■□□□□ 0.31
PTPN9P43378 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC17.01■□□□□ 0.31
PTPN9P43378 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PTPN9P43378 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PTPN9P43378 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PTPN9P43378 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC17.01■□□□□ 0.31
PTPN9P43378 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
PTPN9P43378 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PTPN9P43378 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC17.01■□□□□ 0.31
PTPN9P43378 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
PTPN9P43378 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms