Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
BRCA1P38398 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC19.53■□□□□ 0.72
BRCA1P38398 AC004987.2-201ENST00000395959 1148 ntBASIC19.53■□□□□ 0.72
BRCA1P38398 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC19.53■□□□□ 0.72
BRCA1P38398 MBP-227ENST00000526111 581 ntTSL 4 BASIC19.53■□□□□ 0.72
BRCA1P38398 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
BRCA1P38398 RN7SL574P-201ENST00000581512 297 ntBASIC19.53■□□□□ 0.72
BRCA1P38398 CYGB-203ENST00000589145 788 ntTSL 3 BASIC19.53■□□□□ 0.72
BRCA1P38398 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC19.53■□□□□ 0.72
BRCA1P38398 AP001505.2-201ENST00000616815 443 ntBASIC19.53■□□□□ 0.72
BRCA1P38398 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC19.53■□□□□ 0.72
BRCA1P38398 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
BRCA1P38398 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
BRCA1P38398 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC19.53■□□□□ 0.72
BRCA1P38398 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
BRCA1P38398 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
BRCA1P38398 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
BRCA1P38398 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC19.53■□□□□ 0.72
BRCA1P38398 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC19.53■□□□□ 0.72
BRCA1P38398 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
BRCA1P38398 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC19.52■□□□□ 0.72
BRCA1P38398 AL691432.1-201ENST00000596308 1422 ntBASIC19.52■□□□□ 0.72
BRCA1P38398 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC19.52■□□□□ 0.72
BRCA1P38398 AL121723.1-201ENST00000445194 1519 ntBASIC19.52■□□□□ 0.72
BRCA1P38398 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
BRCA1P38398 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC19.52■□□□□ 0.72
BRCA1P38398 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
BRCA1P38398 KRT18P43-201ENST00000469825 1281 ntBASIC19.52■□□□□ 0.72
BRCA1P38398 RERG-205ENST00000537647 935 ntTSL 2 BASIC19.52■□□□□ 0.72
BRCA1P38398 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC19.52■□□□□ 0.72
BRCA1P38398 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC19.52■□□□□ 0.72
BRCA1P38398 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
BRCA1P38398 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC19.52■□□□□ 0.72
BRCA1P38398 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC19.52■□□□□ 0.72
BRCA1P38398 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
BRCA1P38398 GNE-204ENST00000539208 2190 ntTSL 2 BASIC19.52■□□□□ 0.71
BRCA1P38398 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.71
BRCA1P38398 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
BRCA1P38398 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
BRCA1P38398 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
BRCA1P38398 KRTAP10-13P-201ENST00000412914 571 ntBASIC19.52■□□□□ 0.71
BRCA1P38398 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC19.52■□□□□ 0.71
BRCA1P38398 AC026410.3-201ENST00000514280 936 ntBASIC19.52■□□□□ 0.71
BRCA1P38398 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC19.52■□□□□ 0.71
BRCA1P38398 AC015910.1-201ENST00000579400 975 ntBASIC19.52■□□□□ 0.71
BRCA1P38398 AL451050.2-201ENST00000606967 682 ntBASIC19.52■□□□□ 0.71
BRCA1P38398 AC018635.2-201ENST00000608625 364 ntBASIC19.52■□□□□ 0.71
BRCA1P38398 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
BRCA1P38398 AC135050.7-201ENST00000624508 2218 ntBASIC19.51■□□□□ 0.71
BRCA1P38398 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC19.51■□□□□ 0.71
BRCA1P38398 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.51■□□□□ 0.71
BRCA1P38398 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
BRCA1P38398 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
BRCA1P38398 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
BRCA1P38398 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
BRCA1P38398 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
BRCA1P38398 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
BRCA1P38398 HNRNPA1P32-201ENST00000396326 963 ntBASIC19.51■□□□□ 0.71
BRCA1P38398 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
BRCA1P38398 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
BRCA1P38398 RPL17P11-201ENST00000417593 544 ntBASIC19.51■□□□□ 0.71
BRCA1P38398 RN7SL769P-201ENST00000469386 295 ntBASIC19.51■□□□□ 0.71
BRCA1P38398 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
BRCA1P38398 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
BRCA1P38398 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
BRCA1P38398 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC19.51■□□□□ 0.71
BRCA1P38398 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
BRCA1P38398 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
BRCA1P38398 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC19.51■□□□□ 0.71
BRCA1P38398 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
BRCA1P38398 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
BRCA1P38398 AL138709.1-201ENST00000614840 1693 ntBASIC19.51■□□□□ 0.71
BRCA1P38398 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
BRCA1P38398 PXK-206ENST00000463280 2825 ntTSL 2 BASIC19.51■□□□□ 0.71
BRCA1P38398 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
BRCA1P38398 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
BRCA1P38398 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
BRCA1P38398 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
BRCA1P38398 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
BRCA1P38398 DRD5P1-201ENST00000456605 1438 ntBASIC19.51■□□□□ 0.71
BRCA1P38398 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
BRCA1P38398 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
BRCA1P38398 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC19.5■□□□□ 0.71
BRCA1P38398 RNU1-114P-201ENST00000365297 166 ntBASIC19.5■□□□□ 0.71
BRCA1P38398 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
BRCA1P38398 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
BRCA1P38398 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
BRCA1P38398 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC19.5■□□□□ 0.71
BRCA1P38398 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
BRCA1P38398 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC19.5■□□□□ 0.71
BRCA1P38398 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
BRCA1P38398 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC19.5■□□□□ 0.71
BRCA1P38398 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
BRCA1P38398 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC19.5■□□□□ 0.71
BRCA1P38398 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC19.5■□□□□ 0.71
BRCA1P38398 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
BRCA1P38398 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
BRCA1P38398 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
BRCA1P38398 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
BRCA1P38398 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms