Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
RXRBP28702 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
RXRBP28702 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RXRBP28702 REXO1L8P-201ENST00000604378 1897 ntBASIC21.07■□□□□ 0.96
RXRBP28702 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC21.06■□□□□ 0.96
RXRBP28702 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC21.06■□□□□ 0.96
RXRBP28702 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
RXRBP28702 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RXRBP28702 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RXRBP28702 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
RXRBP28702 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
RXRBP28702 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RXRBP28702 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RXRBP28702 CRCP-204ENST00000398684 492 ntTSL 2 BASIC21.06■□□□□ 0.96
RXRBP28702 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RXRBP28702 RPSAP31-201ENST00000416648 895 ntBASIC21.06■□□□□ 0.96
RXRBP28702 AC097065.1-201ENST00000425737 517 ntBASIC21.06■□□□□ 0.96
RXRBP28702 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC21.06■□□□□ 0.96
RXRBP28702 NOC2LP1-201ENST00000450578 752 ntBASIC21.06■□□□□ 0.96
RXRBP28702 AC012618.1-201ENST00000461223 412 ntBASIC21.06■□□□□ 0.96
RXRBP28702 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
RXRBP28702 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC21.06■□□□□ 0.96
RXRBP28702 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
RXRBP28702 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
RXRBP28702 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
RXRBP28702 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC21.05■□□□□ 0.96
RXRBP28702 AL138709.1-201ENST00000614840 1693 ntBASIC21.05■□□□□ 0.96
RXRBP28702 SNX33P1-201ENST00000592116 1762 ntBASIC21.05■□□□□ 0.96
RXRBP28702 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RXRBP28702 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
RXRBP28702 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
RXRBP28702 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC21.05■□□□□ 0.96
RXRBP28702 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
RXRBP28702 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
RXRBP28702 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RXRBP28702 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RXRBP28702 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC21.05■□□□□ 0.96
RXRBP28702 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
RXRBP28702 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RXRBP28702 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC21.05■□□□□ 0.96
RXRBP28702 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC21.05■□□□□ 0.96
RXRBP28702 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC21.05■□□□□ 0.96
RXRBP28702 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC21.05■□□□□ 0.96
RXRBP28702 WDR7-208ENST00000589935 544 ntTSL 4 BASIC21.05■□□□□ 0.96
RXRBP28702 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC21.05■□□□□ 0.96
RXRBP28702 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC21.05■□□□□ 0.96
RXRBP28702 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC21.05■□□□□ 0.96
RXRBP28702 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC21.05■□□□□ 0.96
RXRBP28702 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RXRBP28702 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC21.05■□□□□ 0.96
RXRBP28702 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RXRBP28702 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC21.05■□□□□ 0.96
RXRBP28702 AC120498.9-201ENST00000339021 3867 ntBASIC21.05■□□□□ 0.96
RXRBP28702 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
RXRBP28702 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RXRBP28702 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RXRBP28702 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
RXRBP28702 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC21.04■□□□□ 0.96
RXRBP28702 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
RXRBP28702 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RXRBP28702 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RXRBP28702 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
RXRBP28702 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RXRBP28702 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RXRBP28702 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RXRBP28702 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RXRBP28702 TEX30-203ENST00000376022 828 ntTSL 2 BASIC21.04■□□□□ 0.96
RXRBP28702 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RXRBP28702 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RXRBP28702 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC21.04■□□□□ 0.96
RXRBP28702 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RXRBP28702 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RXRBP28702 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC21.04■□□□□ 0.96
RXRBP28702 FGFR3P1-201ENST00000449999 601 ntBASIC21.04■□□□□ 0.96
RXRBP28702 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC21.04■□□□□ 0.96
RXRBP28702 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC21.04■□□□□ 0.96
RXRBP28702 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RXRBP28702 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC21.04■□□□□ 0.96
RXRBP28702 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC21.04■□□□□ 0.96
RXRBP28702 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC21.04■□□□□ 0.96
RXRBP28702 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RXRBP28702 AF254983.2-201ENST00000612331 135 ntBASIC21.04■□□□□ 0.96
RXRBP28702 WT1-AS_6.1-201ENST00000614919 121 ntBASIC21.04■□□□□ 0.96
RXRBP28702 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC21.04■□□□□ 0.96
RXRBP28702 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RXRBP28702 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RXRBP28702 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
RXRBP28702 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC21.04■□□□□ 0.96
RXRBP28702 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
RXRBP28702 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
RXRBP28702 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC21.04■□□□□ 0.96
RXRBP28702 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RXRBP28702 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC21.03■□□□□ 0.96
RXRBP28702 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC21.03■□□□□ 0.96
RXRBP28702 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
RXRBP28702 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RXRBP28702 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RXRBP28702 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
RXRBP28702 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC21.03■□□□□ 0.96
RXRBP28702 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms