Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AL691432.1-201ENST00000596308 1422 ntBASIC18.74■□□□□ 0.59
SMARCA1P28370 GCK-209ENST00000616242 2260 ntTSL 5 BASIC18.74■□□□□ 0.59
SMARCA1P28370 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMARCA1P28370 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMARCA1P28370 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC18.73■□□□□ 0.59
SMARCA1P28370 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
SMARCA1P28370 AC006449.5-201ENST00000610658 2098 ntBASIC18.73■□□□□ 0.59
SMARCA1P28370 CYP2T1P-202ENST00000641596 2535 ntBASIC18.73■□□□□ 0.59
SMARCA1P28370 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
SMARCA1P28370 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMARCA1P28370 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
SMARCA1P28370 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC18.73■□□□□ 0.59
SMARCA1P28370 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC18.73■□□□□ 0.59
SMARCA1P28370 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMARCA1P28370 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
SMARCA1P28370 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMARCA1P28370 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMARCA1P28370 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
SMARCA1P28370 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMARCA1P28370 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SMARCA1P28370 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMARCA1P28370 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC18.73■□□□□ 0.59
SMARCA1P28370 AC125807.1-201ENST00000483097 614 ntBASIC18.73■□□□□ 0.59
SMARCA1P28370 SATB1-217ENST00000493952 626 ntTSL 3 BASIC18.73■□□□□ 0.59
SMARCA1P28370 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC18.73■□□□□ 0.59
SMARCA1P28370 AC069120.2-201ENST00000524091 540 ntBASIC18.73■□□□□ 0.59
SMARCA1P28370 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMARCA1P28370 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMARCA1P28370 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC18.73■□□□□ 0.59
SMARCA1P28370 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMARCA1P28370 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SMARCA1P28370 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SMARCA1P28370 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMARCA1P28370 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
SMARCA1P28370 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC18.73■□□□□ 0.59
SMARCA1P28370 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMARCA1P28370 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC18.73■□□□□ 0.59
SMARCA1P28370 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC18.73■□□□□ 0.59
SMARCA1P28370 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMARCA1P28370 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC18.72■□□□□ 0.59
SMARCA1P28370 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC18.72■□□□□ 0.59
SMARCA1P28370 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMARCA1P28370 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMARCA1P28370 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC18.72■□□□□ 0.59
SMARCA1P28370 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMARCA1P28370 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SMARCA1P28370 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMARCA1P28370 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMARCA1P28370 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
SMARCA1P28370 VMA21-202ENST00000370361 693 ntTSL 5 BASIC18.72■□□□□ 0.59
SMARCA1P28370 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SMARCA1P28370 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SMARCA1P28370 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMARCA1P28370 AC004987.2-201ENST00000395959 1148 ntBASIC18.72■□□□□ 0.59
SMARCA1P28370 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMARCA1P28370 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC18.72■□□□□ 0.59
SMARCA1P28370 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMARCA1P28370 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
SMARCA1P28370 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMARCA1P28370 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMARCA1P28370 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMARCA1P28370 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SMARCA1P28370 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
SMARCA1P28370 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
SMARCA1P28370 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMARCA1P28370 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SMARCA1P28370 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC18.72■□□□□ 0.59
SMARCA1P28370 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC18.71■□□□□ 0.59
SMARCA1P28370 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMARCA1P28370 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SMARCA1P28370 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMARCA1P28370 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
SMARCA1P28370 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMARCA1P28370 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMARCA1P28370 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMARCA1P28370 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC18.71■□□□□ 0.59
SMARCA1P28370 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMARCA1P28370 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC18.71■□□□□ 0.59
SMARCA1P28370 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC18.71■□□□□ 0.59
SMARCA1P28370 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMARCA1P28370 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
SMARCA1P28370 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMARCA1P28370 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SMARCA1P28370 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SMARCA1P28370 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMARCA1P28370 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMARCA1P28370 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMARCA1P28370 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMARCA1P28370 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC18.71■□□□□ 0.59
SMARCA1P28370 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMARCA1P28370 HAUS4P1-201ENST00000406739 1145 ntBASIC18.71■□□□□ 0.59
SMARCA1P28370 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC18.71■□□□□ 0.59
SMARCA1P28370 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SMARCA1P28370 DUX4L27-201ENST00000554796 1261 ntBASIC18.71■□□□□ 0.59
SMARCA1P28370 COQ9-214ENST00000567933 882 ntTSL 3 BASIC18.71■□□□□ 0.59
SMARCA1P28370 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC18.71■□□□□ 0.59
SMARCA1P28370 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC18.71■□□□□ 0.59
SMARCA1P28370 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMARCA1P28370 AL596087.1-201ENST00000400979 1969 ntBASIC18.71■□□□□ 0.59
SMARCA1P28370 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms